FC876429

Overview
NameFC876429
Unique NameFC876429
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876429_ssr520 microsatellite FC876429_ssr520:520..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:323..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.068e-83
Identity = 158/212 (74.53%), Postives = 174/212 (82.08%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VVIVAA+RT +CK+KRG FKDT  DDLLAPVL+A+IEKT LNPSEVGDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N ++  G VNP V+ F QA++CLLPMG+TSENVAQRFGV+RQEQD                GKFKDEIIPV TK+VDPKTG EK +T+SVDDG
Sbjct:   52 VVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDG 263          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.105e-80
Identity = 155/212 (73.11%), Postives = 167/212 (78.77%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VVIVAA RTA+CKAKRG FKDT  D+LLA VL+A+IEKT +NPSEVGDIVVGTVL PGS RA ECRMAAFYAGFPETVP+RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N     G VNP V+ F QA +CLLPMGITSENVA RF V+R+EQD                GKFKDEI PV TKIVDPKTG EK +T+SVDDG
Sbjct:   44 VVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGSQRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPRGWKGSVNPNVKKFEQAHNCLLPMGITSENVAHRFNVSREEQDQAAVDSHRKAASATASGKFKDEITPVKTKIVDPKTGDEKPITVSVDDG 255          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 3.931e-78
Identity = 148/214 (69.16%), Postives = 174/214 (81.31%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG--QVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            +VIVAAYRTAICKA+RGGFKDTL DDLLA VLKAV+E+T L+PSEVGDIVVGTV+APGS RAMECR+AA++AGFP++VP+RTVNRQCSSGLQAVADVA +I+AG YDIGI AG+ESM+ + I   G    NP+ + F +ARDCLLPMGITSENVA+RFGVTR+EQD+               GK KDEIIPV TKIVDP+T  EK + +SVDDG
Sbjct:   51 IVIVAAYRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECRVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMSTDHIPGGGFHGSNPRAQDFPKARDCLLPMGITSENVAERFGVTREEQDMAAVESHKRAAAAIASGKLKDEIIPVATKIVDPETKAEKAIVVSVDDG 264          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 9.125e-51
Identity = 108/212 (50.94%), Postives = 143/212 (67.45%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VV+V   RT I +A RGGFKDT  D+LL+ VL AV++  +L P  +GDI VG VL PG+  AM  R+A F +G PETVPL  VNRQCSSGLQAVA++A  I+ G YDIG+A G+ESMT++     G ++ ++    +ARDCL+PMGITSENVA+RFG++RQ+QD                G F+ EI+PV T ++D K G  K +T+S D+G
Sbjct:   38 VVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLQPGAGAAM-ARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSERGNPGNISSRLLENEKARDCLIPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAEIVPVTTTVLDDK-GDRKTITVSQDEG 247          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.125e-51
Identity = 106/212 (50.00%), Postives = 145/212 (68.40%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VV+V   RT I +A RGGFK+T  D+LL+ VL AV++  RL P ++GDI VG VL PG+   M  R+A F +G PETVPL TVNRQCSSGLQAVA++A  I+ G YDIG+A G+ESM+++ +   G ++ ++    +ARDCL PMG+TSENVA+RFG++RQ+QD                G F+ EI+PV T ++D K G +K +T+S D+G
Sbjct:   38 VVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAGAVM-ARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSGMGNPGNISSRLLESEKARDCLTPMGMTSENVAERFGISRQKQDDFALASQQKAASAQSRGCFRAEIVPVTTTVLDDK-GDKKTITVSQDEG 247          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.529e-50
Identity = 104/212 (49.06%), Postives = 141/212 (66.51%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VV+V   RTAIC+A RGGFKDT  D+LL+ V+ AV++   L P ++GDI VG VL PG+   M  R+A F +  PETVPL TVNRQCSSGLQAVA +A  I+ G YDIG+A G+ESM++      G +  ++    +ARDCL+PMGITSENVA+RFG++R++QD                G F+ EI+PV T + D K G ++ +T++ D+G
Sbjct:   38 VVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIM-ARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEG 247          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 4.529e-50
Identity = 106/212 (50.00%), Postives = 143/212 (67.45%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VV+V   RT I +A RGGFKDT  D+LL+ VL AV++  +L P  +GDI VG VL PG+   M  R+A F +G PETVPL  VNRQCSSGLQAVA++A  I+ G YDIG+A G+ESM++++    G ++ ++    +ARDCL+PMGITSENVA+RFG++RQ+QD                G F+ EI+PV T ++D K G  K +T+S D+G
Sbjct:   38 VVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAGAVM-ARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSNRGNPGNISSRLLESDKARDCLIPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAEIVPVTTTVLDDK-GDRKTITVSQDEG 247          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.725e-50
Identity = 107/212 (50.47%), Postives = 143/212 (67.45%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VV+V   RT I +A RG FKDT  D+LL+ VL AV++  +L P ++GDI VG VL PG+   M  R+A F +G PETVPL TVNRQCSSGLQAVA++A  I+ G YDIG+A G+ESMT++     G ++ ++    +ARDCL+PMGITSENVA+RFGV+RQ+QD                G F  EI+PV T +++ K G +K +T+S D+G
Sbjct:   38 VVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAGAIM-ARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSQRGNHGNISSRLLENEKARDCLIPMGITSENVAERFGVSRQKQDAFALASQQKAASAQSRGCFHAEIVPVTTTVLNDK-GDKKTITVSQDEG 247          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.928e-42
Identity = 97/213 (45.54%), Postives = 133/213 (62.44%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN-SISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VVI AAYRTA  K  +G FKDT + +LLA +L+ ++++++++P  +GD+V G VLA G+  A E R A   AG PETVP   +NRQCSSGL AV DVA  I+AG  DIGI  G+ESM+     + V   + K +   +A+ CL+PMGITSENVA ++ V+R+ QD                GKF  EI+P+ T ++D     EK VT++ DDG
Sbjct:   30 VVITAAYRTAHTKGGKGLFKDTSSSELLASLLEGLVKESKIDPKLIGDVVCGNVLAAGAG-ATEHRAACLVAGIPETVPFVALNRQCSSGLMAVNDVANKIRAGQIDIGIGCGVESMSNQYGPNSVTPFSNKFQNNEEAKKCLIPMGITSENVAAKYNVSRKAQDAFAAKSYEKAAAAQAAGKFDQEILPIKTTVLDDDDN-EKEVTVNKDDG 240          
BLAST of FC876429 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.412e-35
Identity = 87/216 (40.28%), Postives = 123/216 (56.94%), Query Frame = 2
Query:    2 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN--SISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDG 637
            VVIVAAYRTAI K  +G F++  ++ +L   LK  I+KT ++PS + D+ +G VL  A G+T   E R A   AG P T     VNR CSSGL A++D+A  IK G  + G+A G ESM+ N     V  +++P +    Q   CL+PMGIT+ENVA +F ++R+ QD                G FK EI+P+ + I+    G EK + +  D+G
Sbjct:   27 VVIVAAYRTAIGKGFKGSFRNVHSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGAT---EHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMSTNYRDPRVAPRIDPHLADDAQMEKCLIPMGITNENVANQFNISRERQDEFAAKSYNKAAKAVASGAFKSEILPIRS-IIRNSDGTEKEIIVDTDEG 238          
The following BLAST results are available for this feature:
BLAST of FC876429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
THIK2_ARATH1.068e-8374.533-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH1.105e-8073.113-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH3.931e-7869.163-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIKB_RAT9.125e-5150.943-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKA_MOUSE9.125e-5150.003-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIK_HUMAN4.529e-5049.063-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIKA_RAT4.529e-5050.003-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIKB_MOUSE7.725e-5050.473-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIK_YARLI5.928e-4245.543-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
THIKB_CANTR2.412e-3540.283-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionC32004F09EF DevOvary1 Citrus clementina cDNA clone C32004F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876429 ID=FC876429; Name=FC876429; organism=Citrus clementina; type=EST; length=639bp
CGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAAACGTG
GAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTCTGAAG
GCAGTGATAGAGAAAACGAGGTTGAATCCCAGCGAAGTAGGGGATATAGT
TGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTGTAGGA
TGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAACTGTC
AACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCAACTGC
TATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGAAAGCA
TGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAGTGGAG
ATCTTTACTCAAGCTCGGGACTGTCTTCTTCCTATGGGTATCACTTCTGA
AAATGTTGCACAAAGATTTGGTGTGACACGACAAGAGCAAGACCTGGCTG
CCATTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCAAGTTT
AAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAAACTGG
AGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAAT
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