FC876437

Overview
NameFC876437
Unique NameFC876437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876437_ssr236 microsatellite FC876437_ssr236:236..247. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10360 contig Ccv1_Contig10360:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876437 vs. ExPASy Swiss-Prot
Match: GTOMC_ARATH (Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=G-TMT PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.109e-47
Identity = 100/176 (56.82%), Postives = 116/176 (65.91%), Query Frame = 1 
Query:  166 RSSLLFGVSSFSRKLIXXXXXXXXXXXXXXXXXRELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS-EAPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXE*VSFQVGDALQQPFPDGQFDLVWS 684
            +SSLLF   S S  +                    L++GIAEFY+E+S LWE+IWGDHMHHGFY+PDSSV +SD  H+ AQ+RMIEE+LRFAGV+ E   K+ K VVDVGCGIGGSSRYLA KFGA+C GITLSPV                  SFQV DAL QPF DG+FDLVWS
Sbjct:   25 KSSLLFRSPSSSSSVSMTTTRGNVAVAAAATSTEALRKGIAEFYNETSGLWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQPFEDGKFDLVWS 200
The following BLAST results are available for this feature:
BLAST of FC876437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GTOMC_ARATH4.109e-4756.82Tocopherol O-methyltransferase, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC32004G06EF DevOvary1 Citrus clementina cDNA clone C32004G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876437 ID=FC876437; Name=FC876437; organism=Citrus clementina; type=EST; length=685bp
GACGTTTGCGATAGTTGTAAGCGCTTTACAGTGTGTACCCACCGCTCGCA
CTTCTTCATTCTTTCTGGAATAAAAAAAGAAAAAAGGCTCTCCGACATCC
AATCAGAAATGTCCGCGTGTCTCCGCCCTTCCCTCCTCCCAGCCCCTCCT
CCGGCTCCTACGTGGCGAAGTTCCCTGCTTTTTGGAGTGAGCTCTTTCTC
GAGGAAGCTAATAACTCGAGCGTCATCTACGACGTCGACGACGACGATGA
GTGACGCTGCCGCACGTGAGCTGAAAGAAGGAATAGCTGAGTTCTACGAC
GAGTCGTCTAGTCTTTGGGAAGACATTTGGGGCGACCACATGCACCACGG
ATTCTACGAGCCGGATTCCTCCGTCTCCGTCTCCGACCACCGCGCCGCCC
AGGTCCGCATGATCGAAGAGACGCTCCGTTTCGCCGGCGTTTCCGAGGCC
CCAACGAAGAGGCCAAAGAATGTTGTGGATGTTGGCTGTGGGATAGGAGG
CAGCTCTAGATACTTGGCTAAGAAATTTGGCGCTAAATGCCAAGGCATCA
CTCTCAGTCCCGTCCAAGCACAGAGGGCTAATGCCCTTGCTGCTGCTCGA
GGCTTAGCCGAATAGGTTTCCTTTCAAGTTGGAGATGCTTTGCAGCAACC
GTTTCCTGATGGGCAATTTGATCTAGTTTGGTCCA
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