FC876441

Overview
NameFC876441
Unique NameFC876441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.386e-85
Identity = 157/182 (86.26%), Postives = 175/182 (96.15%), Query Frame = 2
Query:   71 MALAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            MALAFDEFGRPFI+LR+Q++K+RLRG DAQKAN++AGKAVARILR+SLGPKGMDKMLQ PDGD+TITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAG+LLEQAE+ L+RGIHPIRIAEGYEMASR+AVEHLERIAQKFEF +N+ EPLVQTCMTTL+SK+VNR +R LA
Sbjct:    1 MALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLA 182          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 4.173e-82
Identity = 153/182 (84.07%), Postives = 171/182 (93.96%), Query Frame = 2
Query:   71 MALAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            MAL FDE+ RPFI+LR+QE+KSRL+G DAQKAN++AGK+VARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKLMVELSRSQDY+IGDGTTGVVVMAGSLLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D+EPLVQTCMTTL+SK+V+R +R LA
Sbjct:    1 MALDFDEYWRPFIILREQEKKSRLQGLDAQKANIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALA 182          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 5.450e-82
Identity = 151/182 (82.97%), Postives = 171/182 (93.96%), Query Frame = 2
Query:   71 MALAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            MALAFDE+GRPFI+LR+QE+KSRL+G DA KAN++A KA+ARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE MDVDNQIAKL+VELSRSQDY+IGDGTTGVVVMAG+LLEQAEKLLERGIHPIR+AEGYEMASRIAV+HLE I+ K+EF   D+EPLVQTCMTTL+SK+V+R +R LA
Sbjct:    1 MALAFDEYGRPFIILREQEKKSRLQGLDAHKANIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALA 182          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.491e-63
Identity = 117/180 (65.00%), Postives = 151/180 (83.89%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            LAFDE+GRPF++++ Q+ KSRL G +A K+++ A KAVA  +RTSLGP G+DKM+   DGDVTITNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+ K    +N+ EPL+QT  TTL SK++N   R++A
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMA 186          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.543e-63
Identity = 116/180 (64.44%), Postives = 149/180 (82.78%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            LAFDE+GRPF++++ Q+ KSRL G +A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN   R++A
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMA 186          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.543e-63
Identity = 116/180 (64.44%), Postives = 149/180 (82.78%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            LAFDE+GRPF++++ Q+ KSRL G +A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN   R++A
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMA 186          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.543e-63
Identity = 116/180 (64.44%), Postives = 149/180 (82.78%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            LAFDE+GRPF++++ Q+ KSRL G +A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+R+A+EHL++I+      + D EPL+QT  TTL SK+VN   R++A
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMA 186          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.666e-63
Identity = 116/180 (64.44%), Postives = 150/180 (83.33%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            LAFDE+GRPF++++ Q+ KSRL G +A K+++ A KAVA  +RTSLGP G+DKM+   DGDVT+TNDGATIL  MDVD+QIAKLMVELS+SQD EIGDGTTGVVV+AG+LLE+AE+LL+RGIHPIRIA+GYE A+RIA++HL++I+      +N+ EPL+QT  TTL SK+VN   R++A
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINNPEPLIQTAKTTLGSKVVNSCHRQMA 186          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.264e-62
Identity = 113/182 (62.09%), Postives = 149/182 (81.87%), Query Frame = 2
Query:   71 MALAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            M+L FDE+G PFI++R Q+ K RLRG +A ++++ A K ++ I+++SLGPKGMDKM+ S DG+V +TNDGATILE M VDNQIAKLMV+LS+SQD EIGDGTTGVVV+AGSLLEQAE+L+E+GIHP RI EGYE A +IA EHL+ I+   EF  +++EPL++T MT L SK+VNR  R+++
Sbjct:    1 MSLVFDEYGNPFIVIRDQQAKERLRGIEAHRSHILAAKTISNIMKSSLGPKGMDKMMVSQDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETACKIATEHLKTISDSIEFSKDNIEPLIKTAMTCLGSKIVNRFHRQMS 182          
BLAST of FC876441 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.597e-57
Identity = 110/180 (61.11%), Postives = 149/180 (82.78%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRXQRRLA 616
            L FDE G+PFI++R+QE + R+ G +A K+++ A +AVA  LRTSLGP+G+DKML SPDGDVTITNDGATI+E+MDV + +AKLMVELS+SQD+EIGDGTTGVVV+AG+LLE+AEKL++RGIHPI+IA+G+++A + A+E L+ I+ KF   + + E LV+T  T+L SK+VNR  R+ A
Sbjct:    8 LLFDESGQPFIVMREQENQKRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKFP--VENRERLVETAQTSLGSKIVNRSLRQFA 185          
The following BLAST results are available for this feature:
BLAST of FC876441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 430
Match NameE-valueIdentityDescription
TCPE_ARATH1.386e-8586.26T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA4.173e-8284.07T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA5.450e-8282.97T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MOUSE1.491e-6365.00T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_PONAB2.543e-6364.44T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA2.543e-6364.44T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN2.543e-6364.44T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_RAT5.666e-6364.44T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_DICDI6.264e-6262.09T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_CAEEL1.597e-5761.11T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionC32004G11EF DevOvary1 Citrus clementina cDNA clone C32004G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876441 ID=FC876441; Name=FC876441; organism=Citrus clementina; type=EST; length=616bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
NCAGCGCAGATTGGCT
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