FC876443

Overview
NameFC876443
Unique NameFC876443
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876443_ssr100 microsatellite FC876443_ssr100:100..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7872 contig Ccv1_Contig7872:184..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876443 vs. ExPASy Swiss-Prot
Match: SURE_DESHY (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  235 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLTLSGALFSWSKPLLGISG 516
            +L+TN DG  +PGL  L   L   G Y+V + AP S KS +GHS+TL E + ++   ++  T Y VSG P DCV L + G++    KP L ISG
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSII--PKPDLVISG 93          
BLAST of FC876443 vs. ExPASy Swiss-Prot
Match: SURE_DESHD (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=surE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  235 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLTLSGALFSWSKPLLGISG 516
            +L+TN DG  +PGL  L   L   G Y+V + AP S KS +GHS+TL E + ++   ++  T Y VSG P DCV L + G++    KP L ISG
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSII--PKPDLVISG 93          
BLAST of FC876443 vs. ExPASy Swiss-Prot
Match: SURE_FLAPJ (5'-nucleotidase surE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.073e-12
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  223 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVS--SAEINGATAYEVSGTPVDCVSLTLSGALFSWSKPLLGISG 516
            SKP++LVTN DGI +PG+  L+  +   G   V V AP S +S  GH++T+  T+ ++  SAE    T Y  SGTPVDCV L ++  L    KP L +SG
Sbjct:    2 SKPLILVTNDDGISAPGIRSLIAVMQEIG--TVVVVAPDSPQSAMGHAITINSTLHLNKISAENAAVTEYSCSGTPVDCVKLAVNEIL--KQKPDLCVSG 97          
BLAST of FC876443 vs. ExPASy Swiss-Prot
Match: SURE_CYTH3 (5'-nucleotidase surE OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=surE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 1
Query:  223 SKPVLLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEI-NGATAYEVSGTPVDCVSLTLSGALFSWSKPLLGISG 516
            SKP++LV N DGI S G+  L+E +   G   V V AP S +S  GH++T+  T+ + ++++  G  AYE SGTP DCV L     L    KP L +SG
Sbjct:    2 SKPLILVCNDDGIFSVGIRTLIEVMSELG--EVVVVAPDSPQSGMGHAITIGNTLRLEASDLFPGIVAYECSGTPADCVKLAKHHVL-KGRKPDLVVSG 97          
BLAST of FC876443 vs. ExPASy Swiss-Prot
Match: SURE_DESAD (5'-nucleotidase surE OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=surE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  235 LLVTNGDGIESPGLVYLVEALVREGLYNVHVCAPQSDKSVSGHSVTLRETIAVSSAEINGATAYEVSGTPVDCVSLTLSGALFSWSKPLLGISG 516
            +L+TN DGI++ GL  L   L R G+ NV V AP +++S  GH+V+L   + V   E +G T   V GTPVDCV L L+  L   +KP + +SG
Sbjct:    3 ILLTNDDGIQAVGLRALYHGLKRAGM-NVQVVAPVAEQSAVGHAVSLSSPLRVKKFEEDGFTGLGVYGTPVDCVKLGLTTLL--ETKPDIVVSG 93          
The following BLAST results are available for this feature:
BLAST of FC876443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SURE_DESHY1.656e-1343.625'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_DESHD1.656e-1343.625'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_FLAPJ1.073e-1244.005'-nucleotidase surE OS=Flavobacterium psychrophil... [more]
SURE_CYTH34.509e-1142.425'-nucleotidase surE OS=Cytophaga hutchinsonii (st... [more]
SURE_DESAD5.888e-1143.625'-nucleotidase surE OS=Desulfovibrio salexigens (... [more]
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Properties
Property NameValue
Genbank descriptionC32004H01EF DevOvary1 Citrus clementina cDNA clone C32004H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876443 ID=FC876443; Name=FC876443; organism=Citrus clementina; type=EST; length=516bp
CTTCAATTTGAAAAAAAAGAAAAGGGAAACATGACTTCTGTGAGAAACAA
CTTAATGCCTCCAGGTCTTGTGTCTAACCTGGAACAAGTGCTTTTAAACA
AGAAGAAGAAGAGTAAAGACAATGAAGATGATGGTGATGATGGCACCAGT
AAGCAATCAAACGAAGAGGCCAATGAATCAACGGAGCCCTCTACTTCTGA
TTCGACGGAGAATGTTGATAGTTCAAAGCCTGTGCTTTTGGTCACAAATG
GGGATGGAATTGAGTCTCCTGGCCTTGTTTATCTTGTTGAAGCTTTGGTT
CGTGAAGGGCTCTACAATGTCCACGTTTGCGCTCCTCAATCGGACAAATC
AGTGTCAGGTCATTCTGTGACACTCCGAGAAACGATTGCTGTAAGTTCTG
CTGAAATTAATGGTGCCACAGCGTATGAAGTTTCAGGGACTCCTGTGGAT
TGTGTGTCATTAACACTATCTGGAGCACTATTTTCCTGGTCAAAGCCTTT
GCTGGGGATTAGTGGA
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