FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.223e-57
Identity = 110/152 (72.37%), Postives = 124/152 (81.58%), Query Frame = 3
Query:  162 KSKTRSKXXXXXXXXXXSKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            KS+   K            +  T Q EKFTNP+P+S TT +T  F GLGLAEWAV+TCKELGMR+PTPVQTHC+PKIL G+DVLGLAQTGSGKTAAFALPILHRLAEDPYGV ALV+TPTRELA+QLAEQFKALGS L+LRC V+VGGMD+L
Sbjct:   17 KSRKNPKTVVNIQSQKLDSDQNTPQFEKFTNPNPSSDTTSAT-NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDML 167          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.830e-38
Identity = 81/135 (60.00%), Postives = 94/135 (69.63%), Query Frame = 3
Query:  213 SKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            S  A  A + +    D  +    ST  FA LGL++W V  C  LGMR PT VQ  CIP+ LEG+DVLG+A+TGSGKTAAFALPILHRL EDPYGV AL + PTRELA QLAEQF+ALG+ L LRC   +GG D L
Sbjct:   54 SDEAPAAAVTEHAGDDAAAAAVPST--FAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSL 186          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.461e-36
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            FA LGL+ W V+ C++LG+++PTPVQ  CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG+  LV+TPTRELAYQ+AEQF+ LG  L L+  ++VGGMD++
Sbjct:    4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMV 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.904e-36
Identity = 68/108 (62.96%), Postives = 89/108 (82.41%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            FA +GL+ W V+ C++LG+++PTPVQ  CIP ILEG+D LG A+TGSGKTAAF LPIL +L+EDPYG+  LV+TPTRELAYQ+AEQF+ LG  L L+  ++VGGMD++
Sbjct:    4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMV 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX49_DICDI (Probable ATP-dependent RNA helicase ddx49 OS=Dictyostelium discoideum GN=ddx49 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.172e-32
Identity = 60/110 (54.55%), Postives = 87/110 (79.09%), Query Frame = 3
Query:  282 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            S  TF  LGL  W V  CK+LG + P+ +Q + IP+IL+G+D++  A+TGSGKTA+FA+PIL++L+EDPYGV A+++TPTRELA Q+ EQF A+G+ +++ C VV+GG+D
Sbjct:    2 SDKTFEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGID 111          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.841e-30
Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  120 QILLDGNFPLFAKPKSKTRSKXXXXXXXXXXSKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            Q+L DG+ PL A     +R K          +K+       K  N       TD+  TFA L +  W V +   + ++RPT +Q  CIP+IL+G+D +G ++TGSGKT AFA+PIL + AEDP+G+ ALV+TPTRELA Q+ EQFKA+ S   L+  ++ GG D+
Sbjct:   65 QVLEDGDIPLIATTSVPSRVK----------AKSQNNLLEPKNFNNGAVLAPTDAQTTFAALDVKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISSPQSLKAVLITGGSDM 219          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_BOTFB (ATP-dependent rRNA helicase rrp3 OS=Botryotinia fuckeliana (strain B05.10) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.323e-30
Identity = 67/150 (44.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:  213 SKNAKTAQLEKFT-NPDPNSTTTDSTV--------------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            SK  K ++ E  T +P+P   T D+ V              +F  LG+ +   + C  LG + PTP+Q   IP  L+G+D++GLA+TGSGKTAAFALPIL  L + P  +  LV+ PTRELAYQ+++QF+ALGS + ++C V+VGGMD++
Sbjct:   20 SKKTKESKKESHTPSPEPIEDTEDNRVIEETEEAEEDDAPKSFKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQALLDKPQPLFGLVLAPTRELAYQISQQFEALGSVIRVKCAVIVGGMDMV 169          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.078e-29
Identity = 61/113 (53.98%), Postives = 84/113 (74.34%), Query Frame = 3
Query:  279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            + T TF  LG+ +   +TC+EL   +PTP+Q   IP  LEG+D++GLAQTGSGKTAAFA+P+L  L E+P  +  +V+ PTRELAYQ++E F+ALGS + LR  VVVGGM+++
Sbjct:   61 EQTKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGGMNMM 173          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_BOVIN (Probable ATP-dependent RNA helicase DDX47 OS=Bos taurus GN=DDX47 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 62/125 (49.60%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  237 LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            LE    P   +   + T TF  LG+ +   + C +LG  +PT +Q   IP  L+G+D++GLA+TGSGKT AFALPIL+ L E P  + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D
Sbjct:   10 LESMEAPQ-TAVEVEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 133          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX47_MOUSE (Probable ATP-dependent RNA helicase DDX47 OS=Mus musculus GN=Ddx47 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.403e-29
Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 3
Query:  279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            + T TF  LG+ +   + C +LG  +PT +Q   IP  L+G+D++GLA+TGSGKT AFALPIL+ L E P  + ALV+TPTRELA+Q++EQF+ALGS + ++C V+VGG+D
Sbjct:   21 EETKTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGID 131          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH36_ARATH1.223e-5772.37DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]
RH36_ORYSJ4.830e-3860.00DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
DDX49_HUMAN3.461e-3663.89Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
DDX49_MOUSE5.904e-3662.96Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DDX49_DICDI5.172e-3254.55Probable ATP-dependent RNA helicase ddx49 OS=Dicty... [more]
DBP8_SCLS14.841e-3042.42ATP-dependent RNA helicase dbp8 OS=Sclerotinia scl... [more]
RRP3_BOTFB6.323e-3044.67ATP-dependent rRNA helicase rrp3 OS=Botryotinia fu... [more]
RRP3_YARLI1.078e-2953.98ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
DDX47_BOVIN1.840e-2949.60Probable ATP-dependent RNA helicase DDX47 OS=Bos t... [more]
DDX47_MOUSE2.403e-2953.15Probable ATP-dependent RNA helicase DDX47 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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