FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.181e-72
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.181e-72
Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.489e-72
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA 438
            MAIHLYKTSTPSTRNG VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA+IGDTIVSGTEVPIKMGNALPLSA
Sbjct:    1 MAIHLYKTSTPSTRNGTVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRTEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLSA 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.000e-71
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRN AVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNRAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2B_SOYBN (50S ribosomal protein L2-B, chloroplastic OS=Glycine max GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.706e-71
Identity = 128/131 (97.71%), Postives = 131/131 (100.00%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK+IYGRIVTIEYDPNRNAYICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPLS
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.910e-71
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTP TRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPGTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.910e-71
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNG VDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA+IGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGTVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRTEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.910e-71
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSA 438
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPLSA
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSA 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.800e-71
Identity = 128/131 (97.71%), Postives = 129/131 (98.47%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRN AVDSQVKSNPRNNLIYGQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNRAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 3.800e-71
Identity = 127/131 (96.95%), Postives = 131/131 (100.00%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK+IYGRIVTIEYDPNRNAYICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CUCSA1.181e-7299.2450S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2_CITSI1.181e-7299.2450S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2B_COFAR4.489e-7297.7350S ribosomal protein L2-B, chloroplastic OS=Coffe... [more]
RK2_VITVI1.000e-7198.4750S ribosomal protein L2, chloroplastic OS=Vitis v... [more]
RK2B_SOYBN1.706e-7197.7150S ribosomal protein L2-B, chloroplastic OS=Glyci... [more]
RK2_GOSHI2.910e-7197.7150S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2A_COFAR2.910e-7196.9550S ribosomal protein L2-A, chloroplastic OS=Coffe... [more]
RK2A_CHLSC2.910e-7197.7350S ribosomal protein L2-A, chloroplastic OS=Chlor... [more]
RK2_PANGI3.800e-7197.7150S ribosomal protein L2, chloroplastic OS=Panax g... [more]
RK2A_SOYBN3.800e-7196.9550S ribosomal protein L2-A, chloroplastic OS=Glyci... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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