FC919308

Overview
NameFC919308
Unique NameFC919308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15114 contig Ccv1_Contig15114:39..429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 4.036e-57
Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 3
Query:   54 MAAMTSTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYELNKNP 392
            MAAM STAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYEL+KNP
Sbjct:    1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNP 113          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.220e-30
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 3
Query:  120 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYELNKNP 392
            SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM DMITYADTDVV+VGAGS+GL C YEL+KNP
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNP 109          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.767e-28
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = 3
Query:   54 MAAMTSTAFAPSVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYELNKNP 392
            MAA+ ST    S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TDVV+VGAGSAGLS AYE++KNP
Sbjct:    1 MAAIASTL---SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNP 106          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.119e-25
Identity = 64/111 (57.66%), Postives = 78/111 (70.27%), Query Frame = 3
Query:   93 SSTTNKLFDSSFHGAPMSPSLLRLQPIK----------SSRPNNLSISASAS-PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYELNKNP 392
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F PIKESIVSREMTRRYMTDMITYADTDVV+VGAGSAGLSCAYEL+K+P
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDP 112          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.949e-25
Identity = 64/109 (58.72%), Postives = 76/109 (69.72%), Query Frame = 3
Query:   93 SSTTNKLFDSSFHGAPMSPSLLRLQ---------PIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYELNKNP 392
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F PIKESIVSREMTRRYMTDMIT+ADTDVV+VGAGSAGLSCAYEL+K+P
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDP 109          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.165e-12
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  162 LQPIKSSRPNNLSISASA---SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYEL 380
            + P+KS + +N +++  A    P  +L   KF PIKE  V R M RRY  DM   A +DV++VGAGSAGLSCAY L
Sbjct:   24 MDPLKSKQQSNATVNKPAFKPEPAVNLTPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYAL 99          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.563e-11
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  207 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAY 374
            + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D+V+VGAGSAGL+ AY
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAY 93          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.458e-11
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  240 FKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYELNK 386
            FKF PI+ES VSR MTRRY  D+  YA++D+V++GAGS GLS AY L K
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGK 92          
BLAST of FC919308 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  240 FKFDPIKESIVSREMTRRYMTDMITYADTDVVMVGAGSAGLSCAYELNK 386
            FKF PI+ES VSR MTRRY  D+  YA++DVV+VGAGS GLS AY L K
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAK 96          
The following BLAST results are available for this feature:
BLAST of FC919308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
THI4_CITSI4.036e-5797.35Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL3.220e-3069.23Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.767e-2861.40Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE3.119e-2557.66Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE6.949e-2558.72Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_UROFA5.165e-1248.68Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO2.563e-1157.89Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSOX7.458e-1163.27Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR9.741e-1167.35Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
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Properties
Property NameValue
Genbank descriptionC06055A10T7 PCR Citrus clementina cDNA clone C06055A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919308 ID=FC919308; Name=FC919308; organism=Citrus clementina; type=EST; length=392bp
CTCATTATCAAACTTCTAAGCAGCAGGGGAAGGAGGGGTTAAAAAAAAAA
AACATGGCAGCCATGACTTCTACAGCTTTCGCTCCTTCAGTTTCGTCCAC
CACCAATAAGCTCTTTGACTCATCCTTTCATGGGGCTCCCATGTCACCTT
CTCTTCTACGTCTTCAACCCATCAAATCTTCTCGTCCCAACAACTTGTCC
ATTTCTGCTTCTGCTTCTCCTCCTTATGACTTGAACACTTTCAAGTTTGA
CCCCATCAAAGAATCCATTGTTTCTCGTGAAATGACACGCAGGTACATGA
CGGACATGATCACTTATGCTGACACTGATGTGGTAATGGTTGGTGCTGGC
TCTGCTGGCCTCTCTTGTGCTTATGAGCTCAACAAAAACCCC
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