FC919316

Overview
NameFC919316
Unique NameFC919316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12351 contig Ccv1_Contig12351:567..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 2.238e-67
Identity = 120/139 (86.33%), Postives = 127/139 (91.37%), Query Frame = 3
Query:    3 RQVSXAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            +QVS AGLSVCSIDP+PKLIWPNNYGVWVDEFEAMDLLDCLD TWSGA V+IDDNT KDL+RPYGRVNRK LKSKM+QKCI NGVKFHQAKVIKVIHEESKS+LICNDG+TI A VVLDATGFS  LVQYDKPYN  YQ
Sbjct:  100 QQVSEAGLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDNTAKDLHRPYGRVNRKQLKSKMMQKCIMNGVKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFSRSLVQYDKPYNPGYQ 238          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 2.923e-67
Identity = 120/139 (86.33%), Postives = 126/139 (90.65%), Query Frame = 3
Query:    3 RQVSXAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            +QVS AGLSVCSIDP+PKLIWPNNYGVWVDEFEAMDLLDCLD TWSGA V+IDD T KDLNRPYGRVNRK LKSKM+QKCI NGVKFHQAKVIKVIHEESKS+LICNDG+TI A VVLDATGFS  LVQYDKPYN  YQ
Sbjct:   98 QQVSEAGLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDKTTKDLNRPYGRVNRKQLKSKMMQKCILNGVKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFSRSLVQYDKPYNPGYQ 236          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 3.231e-66
Identity = 119/139 (85.61%), Postives = 125/139 (89.93%), Query Frame = 3
Query:    3 RQVSXAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            +QVS AGLSV SIDPSPKLIWPNNYGVWVDEFEAMDLLDCLD TWSG VV+IDDNT KDL+RPYGRVNRK LKSKM+QKCI NGVKFH AKVIKVIHEE+KS+LICNDGVTI A VVLDATGFS CLVQYDKPY   YQ
Sbjct:  100 QQVSEAGLSVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGTVVYIDDNTTKDLDRPYGRVNRKQLKSKMMQKCILNGVKFHHAKVIKVIHEEAKSMLICNDGVTIQATVVLDATGFSRCLVQYDKPYKPGYQ 238          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.735e-65
Identity = 114/139 (82.01%), Postives = 126/139 (90.65%), Query Frame = 3
Query:    3 RQVSXAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            +QVS AGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVV++D+  KKDL+RPYGRVNRK LKSKMLQKCITNGVKFHQ+KV  V+HEE+ S ++C+DGV I A+VVLDATGFS CLVQYDKPYN  YQ
Sbjct:   99 QQVSEAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKCITNGVKFHQSKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFSRCLVQYDKPYNPGYQ 237          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.113e-58
Identity = 102/133 (76.69%), Postives = 117/133 (87.97%), Query Frame = 3
Query:   21 GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            GLSV SIDP+PKLIWPNNYGVWVDEFE MDLLDCLD TWSGA+V++DD + K+L+RPY RVNRK LKSKM++KC++NGV+FHQA V+K +HEE KS LIC+DGVTI A VVLDATGFS CLVQYDKPYN  YQ
Sbjct:  109 GLSVVSIDPNPKLIWPNNYGVWVDEFEDMDLLDCLDATWSGAIVYVDDRSTKNLSRPYARVNRKNLKSKMMKKCVSNGVRFHQATVVKAMHEEEKSYLICSDGVTIDARVVLDATGFSRCLVQYDKPYNPGYQ 241          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.615e-41
Identity = 75/138 (54.35%), Postives = 101/138 (73.19%), Query Frame = 3
Query:    6 QVSXAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            QVS  G+ VC +DPSP  +WPNNYGVWVDEFE + L DCLD  W  + VHI D+  K L+RPYGRV+RK LK K+L  C+ N VKF++AKV+KV HEE +S ++C+DG  I  ++++DA+G++   ++YDKP N  YQ
Sbjct:   99 QVSKYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYGRVSRKKLKLKLLNSCVENRVKFYKAKVLKVKHEEFESSIVCDDGRKISGSLIVDASGYASDFIEYDKPRNHGYQ 236          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.755e-41
Identity = 74/136 (54.41%), Postives = 101/136 (74.26%), Query Frame = 3
Query:   12 SXAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            S   + VC +DPSP   WPNNYGVWVDEFE + L+DCLD TW    V I+D+  K L+RPYGRV+R +LK+K+L+ C++NGVKFH+AKV  V H+E +S ++C+DG  I A++++DA+GF+   V+YDKP N  YQ
Sbjct:  106 SRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENCVSNGVKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSFVEYDKPRNHGYQ 241          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.332e-40
Identity = 75/137 (54.74%), Postives = 98/137 (71.53%), Query Frame = 3
Query:    9 VSXAGLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIHEESKSLLICNDGVTIXAAVVLDATGFSMCLVQYDKPYNSSYQ 419
            VS  G+ VC +DPSP  +WPNNYGVWVDEFE + L DCLD  W    VHI+D+  K L RPYGRV+RK LK ++L  C+ N VKF++AKV KV HEE +S ++C+DG  I  ++V+DA+GF+   ++YDKP N  YQ
Sbjct:  100 VSKYGIKVCCVDPSPLSMWPNNYGVWVDEFENLGLEDCLDHKWPMTCVHINDHKTKYLGRPYGRVSRKKLKLRLLNSCVENRVKFYKAKVWKVEHEEFESSIVCDDGKKIRGSLVVDASGFASDFIEYDKPRNHGYQ 236          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.522e-15
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 3
Query:   51 PKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIH-EESKSLLICNDGVTIXAAVVLDATG-FSMCLVQYD 395
            P L + NNYGVW DEF  + L  C++  W   +V++DD+    + R YGRV+R+LL  ++L++C+ +GV +  +KV  +    +   L+ C+D   I   +   A+G  S  L+QY+
Sbjct:  139 PDLPFTNNYGVWEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRCVESGVSYLSSKVDSITEASDGLRLVACDDNNVIPCRLATVASGAASGKLLQYE 255          
BLAST of FC919316 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.288e-14
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 3
Query:   51 PKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVHIDDNTKKDLNRPYGRVNRKLLKSKMLQKCITNGVKFHQAKVIKVIH-EESKSLLICNDGVTIXAAVVLDATG 368
            P L + NNYGVW DEF+ + L  C++  W   +V++DD+    + R YGRV+R  L  ++L++C+  GV +  +KV +++     +SL+ C   V I    V  A+G
Sbjct:  136 PDLPFTNNYGVWEDEFKDLGLQACIEHVWRDTIVYLDDDEPILIGRAYGRVSRHFLHEELLKRCVEAGVLYLNSKVDRIVEATNGQSLVECEGDVVIPCRFVTVASG 242          
The following BLAST results are available for this feature:
BLAST of FC919316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
LCYB_SOLLC2.238e-6786.33Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_CAPAN2.923e-6786.33Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC3.231e-6685.61Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_ARATH2.735e-6582.01Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_NARPS1.113e-5876.69Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
CCS_CAPAN1.615e-4154.35Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
CCS_CITSI2.755e-4154.41Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
NXS_SOLTU2.332e-4054.74Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
LCYE_ARATH1.522e-1535.04Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYE_SOLLC1.288e-1435.51Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
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Properties
Property NameValue
Genbank descriptionC06055B09T7 PCR Citrus clementina cDNA clone C06055B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919316 ID=FC919316; Name=FC919316; organism=Citrus clementina; type=EST; length=443bp
CTAGACAAGTTTCANAGGCGGGGCTTTCGGTTTGCTCGATTGATCCATCT
CCCAAATTGATTTGGCCAAATAATTATGGTGTTTGGGTGGATGAATTTGA
GGCCATGGATTTGCTTGATTGCCTTGATACTACTTGGTCTGGTGCTGTTG
TGCACATTGATGATAATACAAAGAAGGATCTTAATAGACCTTATGGGAGA
GTTAATAGGAAGTTGCTGAAGTCGAAAATGCTGCAAAAATGCATAACCAA
TGGTGTTAAGTTTCACCAAGCTAAAGTTATTAAGGTTATTCATGAAGAGT
CCAAATCTTTGTTGATTTGCAATGATGGTGTGACAATTCANGCTGCCGTG
GTTCTTGATGCTACGGGGTTCTCTATGTGTCTTGTCCAGTATGATAAGCC
CTATAATTCAAGTTACCAAAGTGGCNTATGGAATACTANCTGA
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