FC919318

Overview
NameFC919318
Unique NameFC919318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15133 contig Ccv1_Contig15133:682..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919318 vs. ExPASy Swiss-Prot
Match: CRTZ_ESCVU (Beta-carotene hydroxylase OS=Escherichia vulneris GN=crtZ PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = 3
Query:    6 WAHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 326
            + H+ + H   W  HESHH PR+G FELND+FA++ A  AIAL++ G    G+ P    G G+  TV+G+ Y  VHDGLVH+R+P   I    Y +R+  AH+LHH+
Sbjct:   21 FTHRYIMHGWGWRWHESHHTPRKGVFELNDLFAVVFAGVAIALIAVG--TAGVWPLQWIGCGM--TVYGLLYFLVHDGLVHQRWPFHWIPRRGYLKRLYVAHRLHHA 123          
BLAST of FC919318 vs. ExPASy Swiss-Prot
Match: CRTZ_PANAN (Beta-carotene hydroxylase OS=Pantoea ananas GN=crtZ PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.854e-18
Identity = 45/106 (42.45%), Postives = 65/106 (61.32%), Query Frame = 3
Query:    9 AHKALWHASLWHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS 326
            AHK + H   W  H SHH PR+G FE+ND++A++ A  +I L+  G    G+ P    GAG+  T +G+ Y  VHDGLVH+R+P   I    Y +R+  AH++HH+
Sbjct:   24 AHKYIMHGWGWGWHLSHHEPRKGAFEVNDLYAVVFAALSILLIYLG--STGMWPLQWIGAGM--TAYGLLYFMVHDGLVHQRWPFRYIPRKGYLKRLYMAHRMHHA 125          
BLAST of FC919318 vs. ExPASy Swiss-Prot
Match: CRTZ_PARS1 (Beta-carotene hydroxylase OS=Paracoccus sp. (strain PC1) GN=crtZ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.038e-15
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   12 HKALWHASL-WHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS--DKFHGVPYG 353
            H+ + H  L W  H+SHH   +   E ND++ ++ AV A  L + G +   ++    +   LG+TV+G+ Y  +HDGLVH+R+P   I    YFRR+  AH+LHH+   + H V +G
Sbjct:   22 HRWIMHGPLGWGWHKSHHEEHDHALEKNDLYGVVFAVLATILFTVGAYWWPVL----WWIALGMTVYGLIYFILHDGLVHQRWPFRYIPRRGYFRRLYQAHRLHHAVEGRDHCVSFG 134          
BLAST of FC919318 vs. ExPASy Swiss-Prot
Match: CRTZ_PARSN (Beta-carotene hydroxylase OS=Paracoccus sp. (strain N81106 / MBIC 01143) GN=crtZ PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.500e-14
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 3
Query:   12 HKALWHASL-WHMHESHHRPREGPFELNDVFAIINAVPAIALLSFGFFHKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIADVPYFRRVAAAHQLHHS--DKFHGVPYG 353
            H+ + H  L W  H+SHH   +   E ND++ ++ AV A  L + G+    ++    +   LG+TV+G+ Y  +HDGLVH+R+P   I    Y RR+  AH+LHH+   + H V +G
Sbjct:   22 HRWIMHGPLGWGWHKSHHEEHDHALEKNDLYGLVFAVIATVLFTVGWIWAPVL----WWIALGMTVYGLIYFVLHDGLVHQRWPFRYIPRKGYARRLYQAHRLHHAVEGRDHCVSFG 134          
The following BLAST results are available for this feature:
BLAST of FC919318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CRTZ_ESCVU5.201e-2045.79Beta-carotene hydroxylase OS=Escherichia vulneris ... [more]
CRTZ_PANAN2.854e-1842.45Beta-carotene hydroxylase OS=Pantoea ananas GN=crt... [more]
CRTZ_PARS15.038e-1536.75Beta-carotene hydroxylase OS=Paracoccus sp. (strai... [more]
CRTZ_PARSN2.500e-1435.90Beta-carotene hydroxylase OS=Paracoccus sp. (strai... [more]
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Properties
Property NameValue
Genbank descriptionC06055B11T7 PCR Citrus clementina cDNA clone C06055B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919318 ID=FC919318; Name=FC919318; organism=Citrus clementina; type=EST; length=412bp
CACGATGGGCTCATAAAGCTCTGTGGCATGCTTCTTTATGGCATATGCAC
GAGTCTCACCATCGACCAAGAGAGGGTCCTTTTGAGCTAAACGATGTGTT
TGCCATAATCAACGCAGTTCCAGCCATAGCCCTTCTCTCTTTTGGCTTCT
TCCACAAAGGCCTTGTACCTGGTCTCTGTTTTGGTGCTGGACTTGGCATT
ACGGTGTTTGGGATGGCCTACATGTTCGTCCACGATGGTCTCGTTCACAA
AAGGTTCCCTGTGGGTCCCATTGCCGACGTGCCTTATTTCCGGAGAGTCG
CTGCGGCTCACCAGCTTCACCACTCGGATAAATTCCACGGTGTTCCATAT
GGGCTCTTTCTCGGACCTAAGGAGCTTGAAGAAGTGGGGGGACTAGAAGA
ATTGGAGAAGGA
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