FC919319

Overview
NameFC919319
Unique NameFC919319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length299
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC919319 vs. ExPASy Swiss-Prot
Match: ABA2_PRUAR (Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.552e-39
Identity = 75/95 (78.95%), Postives = 88/95 (92.63%), Query Frame = 1
Query:    1 NSIQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVVASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG 285
            N  QGGCMAIEDGYQLA+EL+KA KKS+E+ TP+D+ S+L+SYE +RRLRVA+IHG+AR AA++ASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG
Sbjct:  381 NMGQGGCMAIEDGYQLALELDKAWKKSSETGTPVDVASSLRSYENSRRLRVAIIHGMARMAALMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG 475          
BLAST of FC919319 vs. ExPASy Swiss-Prot
Match: ABA2_NICPL (Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.751e-37
Identity = 73/92 (79.35%), Postives = 84/92 (91.30%), Query Frame = 1
Query:   10 QGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVVASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG 285
            QGGCMAIED YQLA+EL+KA  +S ES TP+DI+S+L+SYE +R+LRV VIHGLAR AA++ASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG
Sbjct:  383 QGGCMAIEDSYQLALELDKALSRSAESGTPVDIISSLRSYESSRKLRVGVIHGLARMAAIMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG 474          
BLAST of FC919319 vs. ExPASy Swiss-Prot
Match: ABA2_SOLLC (Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.593e-37
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = 1
Query:   10 QGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVVASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG 285
            QGGCMAIED YQLA+ELEKAC +S E  +P+DI+S+L+SYE AR+LRV VIHGLAR AA++ASTYKAYLGVGLGPLSFLT++RIPHPGRVGG
Sbjct:  389 QGGCMAIEDSYQLALELEKACSRSAEFGSPVDIISSLRSYESARKLRVGVIHGLARMAAIMASTYKAYLGVGLGPLSFLTQYRIPHPGRVGG 480          
BLAST of FC919319 vs. ExPASy Swiss-Prot
Match: ABA2_CAPAN (Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.042e-36
Identity = 71/92 (77.17%), Postives = 83/92 (90.22%), Query Frame = 1
Query:   10 QGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVVASTYKAYLGVGLGPLSFLTKFRIPHPGRVGG 285
            QGGCMAIED YQLA+ELEKA  +S ES +P+D++S+L+SYE AR+LRV VIHGLAR AA++AS YKAYLGVGLGPLSF+TKFRIPHPGRVGG
Sbjct:  381 QGGCMAIEDSYQLALELEKAWSRSAESGSPMDVISSLRSYESARKLRVGVIHGLARMAAIMASAYKAYLGVGLGPLSFITKFRIPHPGRVGG 472          
The following BLAST results are available for this feature:
BLAST of FC919319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ABA2_PRUAR8.552e-3978.95Zeaxanthin epoxidase, chloroplastic OS=Prunus arme... [more]
ABA2_NICPL2.751e-3779.35Zeaxanthin epoxidase, chloroplastic OS=Nicotiana p... [more]
ABA2_SOLLC3.593e-3778.26Zeaxanthin epoxidase, chloroplastic OS=Solanum lyc... [more]
ABA2_CAPAN3.042e-3677.17Zeaxanthin epoxidase, chloroplastic OS=Capsicum an... [more]
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Properties
Property NameValue
Genbank descriptionC06055B12T7 PCR Citrus clementina cDNA clone C06055B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919319 ID=FC919319; Name=FC919319; organism=Citrus clementina; type=EST; length=299bp
AATTCGATTCAAGGTGGATGCATGGCCATTGAGGATGGTTATCAGCTTGC
AGTAGAGCTTGAGAAAGCCTGTAAAAAAAGCAATGAGTCCAAAACCCCCA
TTGACATTGTTTCTGCTCTAAAGAGCTATGAGAGAGCTAGGAGACTGCGA
GTGGCTGTTATCCATGGACTGGCAAGATCGGCCGCAGTGGTGGCTTCAAC
TTACAAGGCTTATTTAGGTGTTGGACTTGGACCGTTGTCGTTTTTGACAA
AGTTCCGGATACCACATCCTGGAAGAGTTGGTGGAATCACTAGTGAATT
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