FC920204

Overview
NameFC920204
Unique NameFC920204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14096 contig Ccv1_Contig14096:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920204 vs. ExPASy Swiss-Prot
Match: PROD_ARATH (Proline dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=POX PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.500e-29
Identity = 54/131 (41.22%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  193 STTSISAVSP--LNFDEK-PEPTIEKPAANRLGSSVLDINDHEXXXXXXXXXXXXRAAANLHLAAVEPLVDFGIWVMNSRLMDIDLAREVVMCTVRHSFYEHFCAGESAPEATDCVRRVNDA-GLRGMLVY 573
            + T+ +AV P  L+F ++ PEP +  P         LD++D              R+ A LH AA+ P+VD G WVM+S+LMD  + R +V+  V+ +FY+HFCAGE A  A + VR V +A GL+GMLVY
Sbjct:   27 TVTASTAVVPEILSFGQQAPEPPLHHPKPTEQSHDGLDLSDQARLFSSIPTSDLLRSTAVLHAAAIGPMVDLGTWVMSSKLMDASVTRGMVLGLVKSTFYDHFCAGEDADAAAERVRSVYEATGLKGMLVY 157          

HSP 2 Score: 54.299 bits (129), Expect = 2.500e-29
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  575 LEHTDDVSECEQNLQGFLQTVQSAKSLPPESASFVIAKISAICP 706
            +EH DD   C+ N+Q F++T+++AKSLP    S V+ KI+AICP
Sbjct:  159 VEHADDAVSCDDNMQQFIRTIEAAKSLPTSHFSSVVVKITAICP 202          
The following BLAST results are available for this feature:
BLAST of FC920204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PROD_ARATH2.500e-2941.22Proline dehydrogenase, mitochondrial OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC32005C12EF RVDevelop1 Citrus clementina cDNA clone C32005C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920204 ID=FC920204; Name=FC920204; organism=Citrus clementina; type=EST; length=706bp
GAAGCTTTGCCATTGGTATTATATCAATCCAAAAAAAAAAAAATATAGTA
GCAGCAGCAAAACCAAAGGGCAAAAACAAGAAAAAAAAACAAGGCCATCA
AATTTTTCTTCCATAGTCATATGGCCATTCGTTTCCAAGCACCAAAGCTT
CTGAAAAACCTCCGTTACTTCACAAGAGCTCTTAACTCTGCTTCCACCAC
CTCAATCTCCGCCGTTTCGCCGTTGAATTTCGACGAAAAACCTGAACCCA
CCATCGAGAAACCGGCCGCGAACCGTCTTGGCTCGTCGGTTCTTGATATT
AATGATCACGAAAAGCTGTTTTCTCTGCTTTCGACAACTAAGCTTACCCG
TGCAGCTGCGAACCTTCACCTGGCGGCTGTTGAGCCGCTGGTTGATTTCG
GCATCTGGGTTATGAATTCCAGGTTGATGGATATCGACTTGGCACGTGAA
GTTGTGATGTGCACCGTTAGACACAGTTTTTATGAACATTTTTGTGCAGG
TGAGAGCGCTCCTGAGGCCACAGATTGCGTCAGGAGAGTTAATGACGCTG
GTTTAAGAGGCATGCTTGTGTATGCTTGAGCATACTGATGATGTCTCTGA
GTGTGAGCAGAATTTGCAGGGATTTCTCCAAACTGTTCAATCTGCCAAGT
CTCTGCCTCCGGAATCTGCTAGTTTTGTGATAGCGAAGATCTCAGCAATT
TGTCCC
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