FC920214

Overview
NameFC920214
Unique NameFC920214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3958 contig Ccv1_Contig3958:270..1013. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: BCKD_RAT ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.440e-27
Identity = 70/230 (30.43%), Postives = 122/230 (53.04%), Query Frame = 2
Query:   38 AKKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYIYGDPSFTFPYV 727
            +K ++  +++S I+ V     ++ T   + Y    G      +LL S ++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP  +     + A  +C  +YG+AP   I G  +  FP++
Sbjct:   47 SKTVTSFYNQSAIDVVAEKPSVRLTPTMMLYS---GRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFI 265          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: BCKD_HUMAN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.105e-27
Identity = 70/230 (30.43%), Postives = 121/230 (52.61%), Query Frame = 2
Query:   38 AKKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYIYGDPSFTFPYV 727
            +K ++  +++S I+       ++ T   + Y    G      +LL SA++L +ELP+RIA R      LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP  +     + A  +C  +YG+AP   I G  +  FP++
Sbjct:   47 SKTVTSFYNQSAIDAAAEKPSVRLTPTMMLYA---GRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFI 265          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: BCKD_BOVIN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.583e-26
Identity = 70/230 (30.43%), Postives = 122/230 (53.04%), Query Frame = 2
Query:   38 AKKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYIYGDPSFTFPYV 727
            +K ++  +++S I+       ++ T   + Y    G      +LL SA++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP  +     + A  +C  +YG+AP   I G  +  FP++
Sbjct:   47 SKTVTSFYNQSAIDVAAEKPSVRLTPTMMLYS---GRSQDGSHLLKSARYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEARYCQLVRQLLDDHKDVVTLLAEGLRESRKYI------EDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFI 265          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: BCKD_MOUSE ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.526e-26
Identity = 68/230 (29.57%), Postives = 121/230 (52.61%), Query Frame = 2
Query:   38 AKKLSETFSKSLIEEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYIYGDPSFTFPYV 727
            +K ++  +++S I+       ++ T   + Y    G      +LL S ++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      +D   +  FLD+   SR+GIRML   H+ LH     P  +G I T++SP  +     + A  +C  +YG+AP   I G  +  FP++
Sbjct:   47 SKTVTSFYNQSAIDVAAEKPSVRLTPTMMLYS---GRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------QDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDK--PDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAARFPFI 265          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK3_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Mus musculus GN=Pdk3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.224e-23
Identity = 75/215 (34.88%), Postives = 114/215 (53.02%), Query Frame = 2
Query:   77 EEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYI 694
            +++ R+     + ++++  ++FG     +    S  FL KELP+R+A    E+  LP  L  +P+V  V+ WY+ SF +L  + + +S  D R   +F  ++  I+ RHN+VVP MA G+ + K++   DP I       I  FLDRFY +RI  RMLI QH  L     NP  P H IG ID   +   V ++A E A  +C + Y  APE  +
Sbjct:   14 KQIERYSRFSPSPLSIKQFLDFGRDNACEKT--SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPRVLDNFLNVLINIRNRHNDVVPTMAQGVIEYKEKFGFDPFI----SSNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPAHPKH-IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEV 220          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK3_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 3, mitochondrial OS=Homo sapiens GN=PDK3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.129e-23
Identity = 74/215 (34.42%), Postives = 115/215 (53.49%), Query Frame = 2
Query:   77 EEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKE--MDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYI 694
            +++ R+     + ++++  ++FG     +    S  FL KELP+R+A    E+  LP  L  +P+V  V+ WY+ SF +L  + + +S  D +   +F Q++  ++ RHN+VVP MA G+ + K++   DP I       I  FLDRFY +RI  RMLI QH  L     NP  P H IG ID   +   V ++A E A  +C + Y  APE  +
Sbjct:   14 KQIERYSRFSPSPLSIKQFLDFGRDNACEKT--SYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYEN-KSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFI----STNIQYFLDRFYTNRISFRMLINQHTLLFGGDTNPVHPKH-IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEV 220          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK_DROME ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 69/196 (35.20%), Postives = 101/196 (51.53%), Query Frame = 2
Query:  116 VTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH--NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYI 694
            ++++  M+FG    +K   I   FL KELP+R+A    E+  LP  L    +V +V  WY+ SF D+  +     T D  + F   +  I+ RHN+VV  MA G+ ++K+    ++       I  FLDR YMSRI IRMLI QH  L   NP+     IG +D       V R+A E+A  +C + Y ++P   I
Sbjct:   33 LSIKQFMDFGQNACEKKSYI---FLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYEKAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTESSIQYFLDRLYMSRISIRMLINQHTLLFGGNPHAGGRHIGCLDPACDLSDVVRDAYENARFLCDQYYLTSPALEI 225          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK4_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 67/195 (34.36%), Postives = 106/195 (54.36%), Query Frame = 2
Query:  116 VTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            ++++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V  +A E A  +C + Y ++PE
Sbjct:   35 LSMKQLLDFGSENACERTSFS--FLRQELPVRLANILKEIDILPEHLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKVLSDFVDTLVKVRNRHHNVVPTMAQGILEYKDNCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVEDAFECAKMLCDQYYLTSPE 224          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK4_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 73/226 (32.30%), Postives = 118/226 (52.21%), Query Frame = 2
Query:   26 AAMAAKKLSETFSKSLI-EEVGRWGCMKQTGVTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELHNPNPP--PHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPE 685
            A    +  S   S SL+  EV  +     + ++++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   +F   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+ QH+ + + +    P  IG ID     V V ++A E A  +C + Y ++PE
Sbjct:    4 ARFVMRSASSLSSASLVPREVELFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPDRLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKALSEFVDTLVKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QNLQYFLDRFYMNRISTRMLMNQHILIFSDSKTGNPSHIGSIDPNCDVVAVVQDAFECAKMLCDQYYLTSPE 224          
BLAST of FC920214 vs. ExPASy Swiss-Prot
Match: PDK2_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial OS=Rattus norvegicus GN=Pdk2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.365e-22
Identity = 72/200 (36.00%), Postives = 104/200 (52.00%), Query Frame = 2
Query:  116 VTLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLIGQHVELH----NPNPPPHCIGYIDTKMSPVXVARNASEHAHCVCLREYGSAPEFYI 694
            ++++  ++FGS    +    S  FL +ELP+R+A    E+  LP  +   P+V  V+ WY+ S  D+  F D +   D R    FT  +  I+ RHN+VVP MA G+ + K       V      I  FLDRFY+SRI IRMLI QH  +     NP  P H IG ID   S   V ++A + A  +C + Y ++P+  I
Sbjct:   31 LSMKQFLDFGSSNACEKT--SFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLDIMEFLD-KDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSN--QNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHPKH-IGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEI 224          
The following BLAST results are available for this feature:
BLAST of FC920214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
BCKD_RAT5.440e-2730.43[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_HUMAN7.105e-2730.43[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_BOVIN1.583e-2630.43[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_MOUSE3.526e-2629.57[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
PDK3_MOUSE6.224e-2334.88[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK3_HUMAN8.129e-2334.42[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK_DROME2.365e-2235.20[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
PDK4_RAT2.365e-2234.36[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_MOUSE2.365e-2232.30[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK2_RAT2.365e-2236.00[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]

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Properties
Property NameValue
Genbank descriptionC32005D10EF RVDevelop1 Citrus clementina cDNA clone C32005D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920214 ID=FC920214; Name=FC920214; organism=Citrus clementina; type=EST; length=744bp
GGTTGTGAGAAAGCAGAAGCCAGACGCAGCAATGGCTGCTAAGAAATTGT
CGGAGACGTTTTCGAAGAGCTTGATCGAGGAGGTTGGGCGATGGGGATGC
ATGAAACAGACAGGTGTGACCTTGAGGTACATGATGGAGTTTGGCTCAAA
ACCTACAGACAAGAATTTGCTAATTTCTGCTCAGTTTCTTCACAAAGAGC
TTCCAATTAGAATCGCCAGACGAGCAATTGAGCTCGAGACACTTCCTTAC
GGTTTATCCGAGAAGCCTGCCGTTTTGAAGGTTCGAGACTGGTATTTGGA
CTCATTTCGTGATTTGAGGTCGTTTCCTGACATCAGAAGTACGAGTGATG
AGAGGGATTTTACGCAAATGATTAAGGCGATTAAGGTGAGGCATAATAAT
GTGGTGCCCATGATGGCGTTGGGGCTGCAACAATTGAAGAAAGAGATGGA
TCCCAAGATTGTTTACGAGGATCTTCATGAGATTCATCAGTTTCTGGATC
GGTTTTACATGTCTAGGATCGGAATTCGTATGCTTATTGGGCAGCATGTA
GAATTGCACAATCCCAACCCTCCACCTCATTGTATTGGCTACATAGACAC
AAAAATGTCTCCAGTGCANGTTGCTAGGAATGCTAGTGAGCATGCACATT
GTGTTTGTCTGCGGGAGTATGGCAGTGCACCCGAATTTTATATCTACGGT
GATCCCAGTTTTACATTCCCTTACGTCCTTCACACTTGCATCTC
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