FC920217

Overview
NameFC920217
Unique NameFC920217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8167 contig Ccv1_Contig8167:7..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_ARATH (4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.411e-82
Identity = 147/217 (67.74%), Postives = 171/217 (78.80%), Query Frame = 2
Query:   47 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYK-DKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYV 694
            KLVGF  FVR+NPKSD+F+V RFHH+EFWC DATN ARRFSWGLGM   AKSDLSTGN VHASYLL SGDLRF+FTAPYSP              +P+FDH +CRSF +SHGL  R++A+EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDVVLRYVSYK +     +FLPGFE  ++ SSFPLDYGIRRLDHAVGNVPEL PA+ YV
Sbjct:   25 KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYV 241          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_DAUCA (4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.258e-72
Identity = 141/224 (62.95%), Postives = 164/224 (73.21%), Query Frame = 2
Query:   29 TAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFP-LDYGIRRLDHAVGNVPELAPAVAYVK 697
            T+    KLVGF NFVR NPKSD F V RFHH+EFWC DATNT+RRFSWGLGMP+VAKSDLSTGN+VHASYL+RS +L FVFTAPYSP              +P+F  +   SFAA HGLA R+IA+EV D   AF  SVA GA+P+S PV LD+ A +AEV+LYGDVVLR+VS+  +     FLPGFE  +  +SFP LDYGIRRLDHAVGNV EL P V Y+K
Sbjct:   18 TSPATFKLVGFNNFVRANPKSDHFAVKRFHHIEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSVHASYLVRSANLSFVFTAPYSP----STTTSSGSAAIPSFSASGFHSFAAKHGLAVRAIALEVADVAAAFEASVARGARPASAPVELDDQAWLAEVELYGDVVLRFVSFGREEGL--FLPGFEAVEGTASFPDLDYGIRRLDHAVGNVTELGPVVEYIK 235          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_SOLSC (4-hydroxyphenylpyruvate dioxygenase OS=Solenostemon scutellarioides PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.798e-69
Identity = 137/219 (62.56%), Postives = 161/219 (73.52%), Query Frame = 2
Query:   47 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPT-DEISSFPLDYGIRRLDHAVGNVPELAPAVAYVK 697
            KLVG KNFVR NP SD F V+RFHHVEFWC DATNT+RRFSWGLGMP+VAKSDLSTGN+ HASYLLRSG+L FVFTAPYSP              +PTF  +  R+F +SHGLA R++A++V+ A  A++ +V+ GAKP SPPV+L D    IAEV LYGD VLR+VS    A+   FLPGFE   D +S   LDYGIRRLDHAVGNVP+L P V Y+K
Sbjct:   17 KLVGHKNFVRSNPMSDHFPVHRFHHVEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSAHASYLLRSGELSFVFTAPYSP-----SLAEPSSASIPTFSFSDHRAFTSSHGLAVRAVAIQVDSASSAYSAAVSRGAKPVSPPVVLADCETAIAEVHLYGDTVLRFVSCGSGADGW-FLPGFEVVGDGVSCQELDYGIRRLDHAVGNVPKLEPVVDYLK 229          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_HORVU (4-hydroxyphenylpyruvate dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53
Identity = 110/208 (52.88%), Postives = 134/208 (64.42%), Query Frame = 2
Query:   71 VRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPAVAYV 694
            VR NP+SDRF    FHHVEFWC DA + A RF++ LG P+ A+SDLSTGN+ HAS LLRSG L F+FTAPY+               LP+F   A R F+A HG+A RS+A+ V DA  AF  S   GA+P+  PV L      AEV+LYGDVVLR+VS+ D    + FLPGFE      +  +DYG+ R DH VGNVPELAPA AY+
Sbjct:   28 VRFNPRSDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSAHASQLLRSGSLAFLFTAPYA------NGCDAATASLPSFSADAARRFSADHGIAVRSVALRVADAAEAFRASRRRGARPAFAPVDLGRGFAFAEVELYGDVVLRFVSHPD-GTDVPFLPGFEGVTNPDA--VDYGLTRFDHVVGNVPELAPAAAYI 226          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_NEUCR (4-hydroxyphenylpyruvate dioxygenase OS=Neurospora crassa GN=B23G1.170 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 60/212 (28.30%), Postives = 89/212 (41.98%), Query Frame = 2
Query:   56 GFKNFVRQNPKSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN----LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGF------EPTDEISSFPLDYGIRRLDHAVGN 661
            G  ++  Q+ +   F  N + HV +W  +A   A  ++   G   +A   L TG+   ASY++ + D+RFVFT+P                         C      HG A + +A EV++ D  F+ +VA GA     P  L +        A ++ YGD     +S  D      FLPGF        T ++ S PL     R+DH VGN
Sbjct:   15 GTPDYALQSSEVSNF--NGYDHVTWWVGNAKQAASYYNTVFGFKTLAYRGLETGSRYFASYVVGNADVRFVFTSPIRSQKCLPEEEPISDADRKLLQE--CHEHLEKHGDAVKDVAFEVDNVDGVFHKAVAAGADVVQEPTTLTDKMHGSVRTAVIRTYGDTTHTLISRADYNG--PFLPGFRTAAPSSATVQLPSVPL----ARIDHCVGN 216          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_MAGGR (4-hydroxyphenylpyruvate dioxygenase OS=Magnaporthe grisea GN=HPD4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 56/196 (28.57%), Postives = 86/196 (43.88%), Query Frame = 2
Query:  113 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAA---SHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN----LAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYG------IRRLDHAVGN 661
            + HV +W  +A   A  ++   GM I+A   L TG+   ASYL+   D+RFVFT+P                 +   D A  +   A    HG A + +  EV++    +  +V  GA   +PP  L +       +A +Q YGD     +S  +      FLPGF    +++  P  Y       ++R+DH VGN
Sbjct:   38 YDHVTWWVGNAKQAASYYNTLFGMKIIAYRGLETGSRYFASYLVGKEDVRFVFTSP-----IRSHVHLPEDEPISDEDRALLKEMHAHLEKHGDAVKDVCFEVDNVQGVYERAVQQGAVSIAPPKTLSDKEHGSVTMAVIQTYGDTTHTLLSRDNFRG--TFLPGFR---DVNRQPAAYSALAPVPLQRIDHCVGN 223          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_BOVIN (4-hydroxyphenylpyruvate dioxygenase OS=Bos taurus GN=HPD PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 62/203 (30.54%), Postives = 86/203 (42.36%), Query Frame = 2
Query:   86 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAK-PSSPPVILDNLAVI--AEVQLYGDVVLRYVSYKDKANHLD-FLPGFEP----TDEISSFPLDYGIRRLDHAVGNVPE 670
            K +R R   FH V FW  +A   A  +   LG   +A   L TG+    S++++ G + FVF++  +P                  DH         HG   + IA EVED D     +   GAK    P V  D L  +  A +Q YGD     V   +K N+   FLPGFE       ++S  P    +  +DH VGN P+
Sbjct:   10 KPERGRFLHFHSVTFWVGNAKQAASYYCSKLGFEPLAYKGLETGSREVVSHVVKQGQIVFVFSSALNPWNKEMG------------DH------LVKHGDGVKDIAFEVEDCDYIVQKARERGAKIVREPWVEQDKLGKVKFAVLQTYGDTTHTLV---EKMNYTGRFLPGFEAPPFMDPQLSKLP-SCSLEIIDHIVGNQPD 190          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_STRCO (4-hydroxyphenylpyruvate dioxygenase OS=Streptomyces coelicolor GN=hpd PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 58/196 (29.59%), Postives = 83/196 (42.35%), Query Frame = 2
Query:   86 KSDRFRVNRFHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKP-SSPPVILD--NLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNV 664
            ++D F V     V F   +A   A  +S   GM +VA S    G+   ASY+L SG  RFVFT+   P                TF         A HG     +A+EV DA  A   +V HGA+  + P  + D     V+A +  YG+   R+   +       +LPG+     + + P     + +DH VGNV
Sbjct:   14 QADPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMKLVAYSGPENGSRETASYVLESGSARFVFTSVIKPSTDWG-----------TF----LAQHVAEHGDGVVDLAIEVPDARAAHAYAVEHGARSLAEPHEVKDEHGTVVLAAIATYGET--RHTLVERTGYDGPYLPGYVAAKPMVAPPAQRVFQAVDHCVGNV 192          
BLAST of FC920217 vs. ExPASy Swiss-Prot
Match: HPPD_MYCGR (4-hydroxyphenylpyruvate dioxygenase OS=Mycosphaerella graminicola GN=HPPD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 50/192 (26.04%), Postives = 81/192 (42.19%), Query Frame = 2
Query:  113 FHHVEFWCTDATNTARRFSWGLGMPIVAKSDLSTGNTVHASYLLRSGDLRFVFTAPYSPXXXXXXXXXXXXXXLPTFDHAACRSF---AASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP---VILDNLAVIAEVQLYGDVVLRYVSYKDKANHLDFLPGFE---PTDEISSFPLDYGIRRLDHAVGN 661
            +HH E+W  +A   A+ +   +G   VA   L TG+   AS+++++  +RFVFT+P                  P  D A           HG   + +A EV+D    +  +VA+GA+  S P      +   + A ++ YGD    ++          FLPG+      D  + F     +  +DH VGN
Sbjct:   42 YHHAEWWVGNAKQVAQFYITRMGFEPVAHKGLETGSRFFASHVVQNNGVRFVFTSP------VRSSARQTLKAAPLADQARLDEMYDHLDKHGDGVKDVAFEVDDVLAVYENAVANGAESVSSPHTDSCDEGDVISAAIKTYGDTTHTFIQRTTYTG--PFLPGYRSCTTVDSANKFLPPVNLEAIDHCVGN 225          
The following BLAST results are available for this feature:
BLAST of FC920217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HPPD_ARATH1.411e-8267.744-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis... [more]
HPPD_DAUCA2.258e-7262.954-hydroxyphenylpyruvate dioxygenase OS=Daucus caro... [more]
HPPD_SOLSC6.798e-6962.564-hydroxyphenylpyruvate dioxygenase OS=Solenostemo... [more]
HPPD_HORVU8.920e-5352.884-hydroxyphenylpyruvate dioxygenase OS=Hordeum vul... [more]
HPPD_NEUCR3.102e-1328.304-hydroxyphenylpyruvate dioxygenase OS=Neurospora ... [more]
HPPD_MAGGR2.010e-1228.574-hydroxyphenylpyruvate dioxygenase OS=Magnaporthe... [more]
HPPD_BOVIN2.223e-1130.544-hydroxyphenylpyruvate dioxygenase OS=Bos taurus ... [more]
HPPD_STRCO2.903e-1129.594-hydroxyphenylpyruvate dioxygenase OS=Streptomyce... [more]
HPPD_MYCGR3.791e-1126.044-hydroxyphenylpyruvate dioxygenase OS=Mycosphaere... [more]
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Properties
Property NameValue
Genbank descriptionC32005E03EF RVDevelop1 Citrus clementina cDNA clone C32005E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920217 ID=FC920217; Name=FC920217; organism=Citrus clementina; type=EST; length=701bp
GGCTCCAATAAGAATAATGGGCATCGAAACCGCTGAATTGCTGGTCAAGC
TCGTCGGGTTCAAAAACTTCGTCCGCCAGAATCCCAAATCGGACCGGTTC
CGAGTGAACCGCTTCCACCATGTCGAGTTCTGGTGCACTGACGCCACCAA
TACGGCTCGTCGTTTCTCCTGGGGACTCGGCATGCCCATTGTCGCCAAAT
CGGACTTGTCTACCGGCAACACTGTCCATGCATCTTACCTCTTACGTTCT
GGCGACCTCCGTTTCGTCTTTACGGCGCCGTATTCCCCTTCAATCTCCGA
CGCCGCCGATGCTGGCAACTCCTCAGCATCTCTCCCGACTTTCGACCACG
CAGCTTGCCGCAGTTTCGCCGCGTCTCATGGGCTCGCCGCGCGGTCGATT
GCTGTTGAAGTTGAAGACGCCGACGTTGCTTTCAACACCAGCGTGGCTCA
CGGTGCTAAGCCCTCCTCTCCTCCTGTGATTCTCGATAACCTTGCTGTGA
TTGCCGAGGTCCAGTTATACGGCGACGTCGTTTTGCGTTATGTTAGTTAT
AAAGATAAAGCGAATCATCTTGATTTCCTGCCGGGTTTCGAACCGACGGA
TGAGATTTCATCGTTTCCGTTGGATTACGGAATCAGGCGGCTCGATCACG
CCGTCGGTAACGTTCCGGAACTCGCTCCGGCTGTTGCTTATGTGAAATCA
T
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