FC920220

Overview
NameFC920220
Unique NameFC920220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920220_ssr40 microsatellite FC920220_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14100 contig Ccv1_Contig14100:1..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920220 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.107e-46
Identity = 101/184 (54.89%), Postives = 114/184 (61.96%), Query Frame = 1 
Query:  103 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAV 654
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV G+                                      YGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GA CGPEAV
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGD--------------------------------------YGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAV 146
[Close]
BLAST of FC920220 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 40/115 (34.78%), Postives = 54/115 (46.96%), Query Frame = 1 
Query:  283 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGE*DCPSSSLQGLRXXXXXXXXXXXXXXXXT**ILLL*CSYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 627
            ++YGPDR  FL  G    ++ PEYLTGE PG+                                      YG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGD--------------------------------------YGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQY 106
The following BLAST results are available for this feature:
BLAST of FC920220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB26_ARATH1.107e-4654.89Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE1.510e-1134.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
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Properties
Property NameValue
Genbank descriptionC32005E07EF RVDevelop1 Citrus clementina cDNA clone C32005E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920220 ID=FC920220; Name=FC920220; organism=Citrus clementina; type=EST; length=654bp
GACTCTCATCTTCACCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAG
CAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCT
CCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCT
GTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGT
TGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCG
TCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGAC
CGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGA
GTACTTGACCGGAGAAGTTCCCGGAGAGTAGGATTGTCCTTCTTCTTCCC
TTCAGGGCCTCAGATGATTTTTCGTGAACATTGTTTAGTTGAATGTTTTT
TAAAACATTAATACATAATGAATTTTGTTGCTTTAATGCAGCTATGGTTA
CGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGG
CATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTC
ATCATTCCTGAAGCCTTTAACAAGTTTGGTGCNTACTGTGGTCCTGAAGC
TGTC
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