FC920231

Overview
NameFC920231
Unique NameFC920231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:62..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_SPIOL (Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.394e-92
Identity = 174/209 (83.25%), Postives = 188/209 (89.95%), Query Frame = 2
Query:   62 MSTGSLCSST--TQINGFTGGFMLQKT--NLNQPSSLSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            MS  SLC ST  +QINGF GG  ++K   + + P+SL+FTRR++ T+VKA++RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T LS IE VLDVVDLVLIMSVNPGFGG SF
Sbjct:    1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSF 209          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_SOLTU (Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.241e-90
Identity = 167/204 (81.86%), Postives = 182/204 (89.22%), Query Frame = 2
Query:   65 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            S GS     +QI+GF G   LQK + + P+SL+FTRRRI T+V AS+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AIE VLD VDLVLIMSVNPGFGG SF
Sbjct:    1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSF 204          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ORYSJ (Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 4.236e-81
Identity = 153/173 (88.44%), Postives = 163/173 (94.22%), Query Frame = 2
Query:  158 LSFTRRRIHTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            L+F+  R    V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNPGFGG SF
Sbjct:   26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSF 198          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_SYNY3 (Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.765e-56
Identity = 106/149 (71.14%), Postives = 128/149 (85.91%), Query Frame = 2
Query:  230 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T   LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T L  +E VL V DL+LIMSVNPGFGG SF
Sbjct:    4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSF 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_BACSU (Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 98/148 (66.22%), Postives = 117/148 (79.05%), Query Frame = 2
Query:  233 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            I V+PSILSA+FA LG ++K VE  G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLPLDVHLMI EP++ +P F KAGADI+SVH E  +  HLHRT+  IK+ G KAGVVLNP T +  IE V D +DLVL+M+VNPGFGG  F
Sbjct:    2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLPLDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTPVQVIEHVFDDLDLVLLMTVNPGFGGQKF 147          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.924e-41
Identity = 84/152 (55.26%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  221 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +VPN+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+I+S H E S   H+ RT+  I+D G KAG+VLNPAT L  ++  LD +DLVL+MSVNPGFGG +F
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLGWLDHTLDQLDLVLLMSVNPGFGGQAF 161          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.310e-41
Identity = 83/152 (54.61%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  221 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            S+  I ++PSILSA+FA+LGE+V A+E  G D +H DVMD  +V N+TIGPLV +A+RP+  +P+DVHLM+   +  +P F KAGA+++S H E S   H+ RT+  I+D G KAG+VLNPAT LS ++  LD +DLVL+MSVNPGFGG +F
Sbjct:   12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLNPATPLSWLDHTLDKLDLVLLMSVNPGFGGQAF 161          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.792e-38
Identity = 78/147 (53.06%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            ++ SILSA+FA+LGE  K    AG DWIH DVMD  +VPN+T+GP+++ ALR     +P+DVHLM+   +  +P F +AGAD ++ H E  ST H+ RTLN IK+ G KAG+ LNPATSL+ ++ V++ +DL+L+MSVNPGFG  SF
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVMEKLDLILLMSVNPGFGNQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.290e-37
Identity = 80/148 (54.05%), Postives = 106/148 (71.62%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSILSA+FA+LGE    V  AG D +H DVMD  +VPN+TIGP+V +ALR      P+DVHLM+   ++ VPDF KAGA  +S H E S   H+ RT+  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF
Sbjct:    5 LIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMDKIDVILLMSVNPGFGGQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.875e-37
Identity = 78/147 (53.06%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSIL+ ++  +GEQ++A    G D +H DVMDG FVPNIT G  ++  +R    LP+D HLMI  P++ +P F++AGA+ +SVH E  +  H+HRTL  IK+LGAKAGVV+NP TSLSAIE  L   D VL+MSVNPGF G  F
Sbjct:    3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSLSAIEEALYYADYVLLMSVNPGFSGQKF 147          
The following BLAST results are available for this feature:
BLAST of FC920231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_SPIOL2.394e-9283.25Ribulose-phosphate 3-epimerase, chloroplastic OS=S... [more]
RPE_SOLTU2.241e-9081.86Ribulose-phosphate 3-epimerase, chloroplastic (Fra... [more]
RPE_ORYSJ4.236e-8188.44Ribulose-phosphate 3-epimerase, chloroplastic OS=O... [more]
RPE_SYNY32.765e-5671.14Ribulose-phosphate 3-epimerase OS=Synechocystis sp... [more]
RPE_BACSU4.276e-4966.22Ribulose-phosphate 3-epimerase OS=Bacillus subtili... [more]
RPEC_RALEH1.924e-4155.26Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH7.310e-4154.61Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_BUCAP5.792e-3853.06Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_SERMA1.290e-3754.05Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]
RPE_AQUAE2.875e-3753.06Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]

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Properties
Property NameValue
Genbank descriptionC32005F06EF RVDevelop1 Citrus clementina cDNA clone C32005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920231 ID=FC920231; Name=FC920231; organism=Citrus clementina; type=EST; length=677bp
GACTAGCCATAACCAAACCAACAGCTACGTTTTAGAGAGAGAAACAAAAA
AGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGATC
AATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCC
CAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGCAT
CAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCT
ATTCTCTCTGCTAATTTTGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGA
ATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTTTG
TTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTG
ACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAACG
AGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTG
AGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAGAT
TTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGC
AATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGA
ACCCTGGCTTTGGTGGGGCAAGCTTTA
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