FC920235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5) HSP 1 Score: 338.191 bits (866), Expect = 4.711e-95 Identity = 162/205 (79.02%), Postives = 177/205 (86.34%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 MSHRKFEHPRHGSLGFLPRKRA RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET YVKTPRGLRSLNTVWAQHLSEEVRRRFYKNW QY++++GKK IQAQLEK+KKYA+V+RVLAHTQIRKMKGLKQKKAH+MEIQ+NGGTIA+KVD+AY FFEKQ Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQ 205 HSP 2 Score: 31.5722 bits (70), Expect = 4.711e-95 Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 3 Query: 648 KAIPVDAVFQKDEMID 695 K IP++AVFQKDEMID Sbjct: 204 KQIPIEAVFQKDEMID 219
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2) HSP 1 Score: 335.109 bits (858), Expect = 1.046e-94 Identity = 160/205 (78.05%), Postives = 176/205 (85.85%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 MSHRKFEHPRHGSLGFLPRKR++RHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIET YVKTPRGLRSLN+VWAQHLSEEVRRRFYKNWC +Y++D GKK IQ QLEK+KKYAS+VRV+AHTQIRKMKGLKQKKAHLMEIQ+NGGTIA+KVDY Y FFEK+ Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKE 205 HSP 2 Score: 33.4982 bits (75), Expect = 1.046e-94 Identity = 15/16 (93.75%), Postives = 15/16 (93.75%), Query Frame = 3 Query: 648 KAIPVDAVFQKDEMID 695 K IPVDAVFQKDEMID Sbjct: 204 KEIPVDAVFQKDEMID 219
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4) HSP 1 Score: 331.643 bits (849), Expect = 1.948e-93 Identity = 162/205 (79.02%), Postives = 174/205 (84.88%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIET YVKTPRGLRSL TVWAQHLSEE+RRRFYKNW ++ET+EGKK IQ+QLEK+KKY SV+RVLAHTQIRKMKGLKQKKAHL EIQ+NGG IA+KVDYA FEKQ Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQ 205 HSP 2 Score: 32.7278 bits (73), Expect = 1.948e-93 Identity = 13/16 (81.25%), Postives = 15/16 (93.75%), Query Frame = 3 Query: 648 KAIPVDAVFQKDEMID 695 K +PVDA+FQKDEMID Sbjct: 204 KQVPVDAIFQKDEMID 219
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2) HSP 1 Score: 265.774 bits (678), Expect = 4.355e-72 Identity = 133/204 (65.20%), Postives = 157/204 (76.96%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651 MSHRK+E PRHGSL FLPRKRAARHRGKVK+FPKDDP KP LTA +GYKAGMT +VRD+++PG+K+HKKE EAVTIIET Y++TPRGLRSL TVWA+HLS+EV+RRFYKNW ++ + G SI +LE+IKKY +VVRVLAHTQIRK LKQKKAHLMEIQVNGG++A+KVD+A FEK Sbjct: 1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEK 202 HSP 2 Score: 27.335 bits (59), Expect = 4.355e-72 Identity = 10/16 (62.50%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 648 KAIPVDAVFQKDEMID 695 K I +D++F+KDEMID Sbjct: 202 KPIEIDSIFEKDEMID 217
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2) HSP 1 Score: 269.24 bits (687), Expect = 1.451e-71 Identity = 139/204 (68.14%), Postives = 157/204 (76.96%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651 MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+++PGSK+HK+E EAVTIIET YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW +Y E +SI +LE+IKKY SVVRVLAHTQIRK L QKKAHLMEIQVNGG++A+KV++A FEK Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2) HSP 1 Score: 268.855 bits (686), Expect = 1.895e-71 Identity = 138/204 (67.65%), Postives = 157/204 (76.96%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651 MSH KFE PRHGSLGFLPRKRA+R RGKVKAFPKDD SKP LTAFLGYKAGMTHIVRD+++PGSK+HK+E EAVT+IET YV+TPRGLRSL TVWA+HLSEEV+RRFYKNW +Y E +SI +LE+IKKY SVVRVLAHTQIRK L QKKAHLMEIQVNGG++A+KV++A FEK Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 1.500e-69 Identity = 128/204 (62.75%), Postives = 156/204 (76.47%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651 MSHRK+E PRHGSL +LPRKRAARHRGKVK+FPKDD KP LTA +GYKAGMT IVRD+++PG+K HKKE EAVTII+T Y++TPRGLRSL TVWA+HLS+EV+RRFYKNW ++ + G +I +LE+IKKY +VVRVLAHTQIRK LKQKKAHLMEIQ+NGG++A+KV++ +G FEK Sbjct: 1 MSHRKYEAPRHGSLAYLPRKRAARHRGKVKSFPKDDAKKPVHLTAAMGYKAGMTTIVRDLDRPGAKAHKKEVVEAVTIIDTPPMIVVGLVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYVKKHSDNNG-AAITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQINGGSVADKVEFGHGLFEK 202 HSP 2 Score: 25.409 bits (54), Expect = 1.500e-69 Identity = 8/16 (50.00%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 648 KAIPVDAVFQKDEMID 695 K + +D++F+KDE+ID Sbjct: 202 KPVSIDSIFEKDEVID 217
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3) HSP 1 Score: 258.455 bits (659), Expect = 9.619e-69 Identity = 124/205 (60.49%), Postives = 156/205 (76.10%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V++PGSK++KKE EAVTI+ET YV+TPRGLR+ TV+A+H+S+E +RRFYKNW +++ D GKK ++ +KKY V+R++AHTQ+R + L+QKKAHLMEIQVNGGT+AEK+D+A E+Q Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQ 204 HSP 2 Score: 23.483 bits (49), Expect = 9.619e-69 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 654 IPVDAVFQKDEMID 695 +PV+ VF +DEMID Sbjct: 205 VPVNQVFGQDEMID 218
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2) HSP 1 Score: 258.455 bits (659), Expect = 9.619e-69 Identity = 124/205 (60.49%), Postives = 157/205 (76.59%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 MSHRKF PRHGSLGFLPRKR++RHRGKVK+FPKDDPSKP LTAFLGYKAGMTHIVR+V++PGSK++KKE EAVTI+ET YV+TPRGLR+ TV+A+H+S+E +RRFYKNW +++ ++GKK ++ +KKY V+RV+AHTQ+R + L+QKKAHLMEIQVNGGT+AEK+D+A E+Q Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWARERLEQQ 204 HSP 2 Score: 23.483 bits (49), Expect = 9.619e-69 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 654 IPVDAVFQKDEMID 695 +PV+ VF +DEMID Sbjct: 205 VPVNQVFGQDEMID 218
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2) HSP 1 Score: 253.062 bits (645), Expect = 1.636e-68 Identity = 121/205 (59.02%), Postives = 152/205 (74.15%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LTAF+ +KAGMTHIVR+V+KPGSK++KKE EAVTI E Y+ TPRG R TVWA+HLSE+ R RFYKNW +++ ++G+KSI+A L K+KKY S +RV+AHTQ++ MK ++KKAH+MEIQ+NGGT+AEKVD+A EKQ Sbjct: 1 MSHRKFSAPRHGSMGFTPKKRSKRHRGKVKAFPKDDPTKPIHLTAFIAFKAGMTHIVREVDKPGSKVNKKEVVEAVTIFEAPPMVIVGIVGYIDTPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQ 204 HSP 2 Score: 28.1054 bits (61), Expect = 1.636e-68 Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 648 KAIPVDAVFQKDEMID 695 K +PVD+VF +DEMID Sbjct: 203 KQVPVDSVFAQDEMID 218 The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bpback to top |