FC920237

Overview
NameFC920237
Unique NameFC920237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14104 contig Ccv1_Contig14104:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920237 vs. ExPASy Swiss-Prot
Match: TIF6B_ARATH (Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.336e-20
Identity = 83/228 (36.40%), Postives = 120/228 (52.63%), Query Frame = 3
Query:    6 KEPVIVVKEEVNNDVCKEIGFSKGSAIQWPFSNKVSAVP-QFMSFKVAQEDKNKKILSDHLGSSG-FMPFS-AEAYEHNQRRGMAEVQKSFDLDRRGGTHISLTAYSVPHEVHSVHCSHDIKTFPVSNQ---AIPVSINNPVFKNQ-FATIGQNMGGANVKQQFLGGIPVTSPH-TVLPTIGSFGGVHESWNNIKTRGSP-QLTIFYAGTVNVFEDISPEKAXAIMLL 662
            K   I VKEE +    ++   ++G  + W FSNKVSA   QF+SF+  QED+++K  + HL  SG FMP S A+ Y+  ++   + VQ                                ++ FP SNQ      VS++ P F++  +A  G++    N   Q L G+P+ +P  ++LP  GS  G  +  ++ K  GSP QLTIFYAG+V V++DISPEKA AIMLL
Sbjct:   11 KNSPITVKEETSES-SRDSAPNRG--MNWSFSNKVSASSSQFLSFRPTQEDRHRKSGNYHLPHSGSFMPSSVADVYDSTRKAPYSSVQ-------------------------------GVRMFPNSNQHEETNAVSMSMPGFQSHHYAPGGRSFMNNNNNSQPLVGVPIMAPPISILPPPGSIVGTTDIRSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLL 204          
BLAST of FC920237 vs. ExPASy Swiss-Prot
Match: TIF6A_ARATH (Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.732e-15
Identity = 69/222 (31.08%), Postives = 97/222 (43.69%), Query Frame = 3
Query:   18 IVVKEEVNNDVCKEIGFSKGSAIQWPFSNKVSAVPQFMSFKVAQEDKNKKILSDHLGSSGFMPFSAEAYEHNQRRGMAEVQKSFDLDRRGGTHISLTAYSVPHEVHSVHCSHDIKTFPVSNQ----AIPVSINNPVFKNQFATIGQNMGGANVKQQFLGGIPVTSPHTVLPTIGSFGGVHESWNNIKTRGSP---QLTIFYAGTVNVFEDISPEKAXAIMLL 662
            I VKEE N D     G      + W FS+KV + PQF+SF  +Q++     ++DHL SS  M       + NQR   + +Q+                                + FP S+Q     I VS++ P + N F           +  Q LGG P+ +P            V  +   I++   P   QLTIFYAG+V V++DI+PEKA AIMLL
Sbjct:   15 ITVKEETNEDSAPSRGM-----MDWSFSSKVGSGPQFLSFGTSQQETRVNTVNDHLLSSAAM-------DQNQRTYFSSLQED-------------------------------RVFPGSSQQDQTTITVSMSEPNYINSF-----------INHQHLGGSPIMAPPV---------SVFPAPTTIRSSSKPLPPQLTIFYAGSVLVYQDIAPEKAQAIMLL 173          
The following BLAST results are available for this feature:
BLAST of FC920237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF6B_ARATH2.336e-2036.40Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B ... [more]
TIF6A_ARATH1.732e-1531.08Protein TIFY 6A OS=Arabidopsis thaliana GN=TIFY6A ... [more]
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Properties
Property NameValue
Genbank descriptionC32005G02EF RVDevelop1 Citrus clementina cDNA clone C32005G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920237 ID=FC920237; Name=FC920237; organism=Citrus clementina; type=EST; length=663bp
AGCTCAAAGAACCAGTCATTGTGGTGAAGGAAGAGGTCAACAATGATGTT
TGCAAAGAGATAGGATTTAGTAAAGGGTCGGCGATTCAGTGGCCCTTCTC
CAACAAGGTCAGTGCAGTTCCTCAATTCATGTCTTTTAAGGTTGCTCAAG
AAGATAAGAATAAGAAGATTCTATCTGATCACCTGGGGTCCTCTGGATTT
ATGCCTTTCTCTGCGGAAGCATATGAGCATAATCAAAGGCGTGGAATGGC
CGAAGTTCAGAAATCATTCGATCTCGATAGGCGAGGTGGGACTCATATTT
CACTGACAGCTTATTCTGTGCCACATGAAGTGCATTCTGTGCACTGTTCT
CATGATATAAAGACATTTCCAGTCTCCAACCAGGCAATTCCGGTTTCTAT
CAACAACCCTGTCTTCAAGAATCAATTTGCTACCATAGGTCAGAACATGG
GTGGTGCCAACGTGAAGCAACAGTTTCTTGGAGGAATTCCTGTTACATCT
CCACATACAGTTCTTCCCACCATTGGATCTTTTGGTGGGGTACATGAATC
ATGGAACAATATCAAAACCCGTGGATCTCCTCAGTTGACCATCTTTTATG
CCGGTACAGTTAATGTCTTTGAAGATATCTCGCCTGAGAAGGCTCANGCT
ATTATGCTATTAG
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