FC920238

Overview
NameFC920238
Unique NameFC920238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12680 contig Ccv1_Contig12680:115..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920238 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.006e-47
Identity = 97/108 (89.81%), Postives = 104/108 (96.30%), Query Frame = 3
Query:  333 MTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQANTDGLRENIL 656
            M LD+LFEQKGEVAK+VLEELEKVMG YGY+IEHILMVDIIPD +VR+AMNEINAAQR+QLAS+YKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQA TDGLRENIL
Sbjct:    1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENIL 108          
BLAST of FC920238 vs. ExPASy Swiss-Prot
Match: Y1128_SYNY3 (Uncharacterized protein slr1128 OS=Synechocystis sp. (strain PCC 6803) GN=slr1128 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 47/190 (24.74%), Postives = 101/190 (53.16%), Query Frame = 3
Query:   27 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETK-TKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYL 593
            +++ +  +VER G + K   PGL+F  P   + +    +TR   +D+  ++  TKDNV +     + +RI+  + + A+Y+++N +  +   V   +R+ + ++ LD+ F  + E+ + +L EL+     +G  +  + + DI+P  AV  +M     A+R + A++   E ++   +  A+ +A+A+ L
Sbjct:   23 VNEKNEYLVERLGSYNKKLTPGLNFTVPILDR-VVFKQTTREKVIDIPPQSCITKDNVAITADAVVYWRII--DMEKAYYKVENLQSAMVNLVLTQIRSEIGKLELDQTFTARTEINELLLRELDISTDPWGVKVTRVELRDIMPSKAVLDSMELQMTAERKKRAAILTSEGQRDSAINSAQGDAQARVL 209          
BLAST of FC920238 vs. ExPASy Swiss-Prot
Match: Y827_METJA (Uncharacterized protein MJ0827 OS=Methanocaldococcus jannaschii GN=MJ0827 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 45/173 (26.01%), Postives = 90/173 (52.02%), Query Frame = 3
Query:   27 IDQASVGIVERWGRFEKLAEPGLHFFNPCAGQWLAGILSTRINSLDVRIETKTKDNVFVQLLCSIQYRIVRANADDAFYELQNPKEQIQAYVFDVVRALVPRMTLDELFEQKGEVAKAVLEELEKVMGAYGYSIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEK 545
            ++Q   G++ R GR     +PG++   P     +   + TR+  +  + E  TKDN  V++   + YR++  + + A  E+++ +  I       +RA++  M LDE+  ++  +   +LE L++   A+G  IE + + +I P   ++ AM +   A+RL+ A++ + E EK
Sbjct:   28 VNQYEGGLIFRLGRVIGKLKPGINIIIPFLDVPVKVDMRTRVTDIPPQ-EMITKDNAVVKVDAVVYYRVI--DVEKAILEVEDYEYAIINLAQTTLRAIIGSMELDEVLNKREYINSKLLEILDRETDAWGVRIEKVEVKEIDPPEDIKNAMAQQMKAERLKRAAILEAEGEK 197          
The following BLAST results are available for this feature:
BLAST of FC920238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PLZ12_LUPPO1.006e-4789.81Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
Y1128_SYNY31.051e-1224.74Uncharacterized protein slr1128 OS=Synechocystis s... [more]
Y827_METJA3.381e-1126.01Uncharacterized protein MJ0827 OS=Methanocaldococc... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32005G03EF RVDevelop1 Citrus clementina cDNA clone C32005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920238 ID=FC920238; Name=FC920238; organism=Citrus clementina; type=EST; length=664bp
ATTCGTTTTGCATGTCGTGTGGGTGCATCGACCAGGCGAGTGTCGGCATC
GTCGAGAGGTGGGGCCGGTTCGAGAAGTTGGCTGAACCGGGTCTACACTT
TTTCAACCCTTGCGCGGGGCAGTGGCTCGCTGGTATCCTCTCCACCAGGA
TCAATTCCCTCGATGTCCGCATCGAGACCAAAACCAAGGACAATGTCTTT
GTGCAACTGCTGTGTTCAATTCAGTACCGGATTGTCAGAGCAAATGCTGA
TGATGCATTTTATGAGTTGCAGAACCCCAAAGAGCAGATCCAGGCTTATG
TGTTTGATGTGGTTCGTGCTCTTGTTCCAAGAATGACATTGGATGAGCTC
TTTGAACAAAAAGGCGAAGTTGCTAAGGCTGTTTTGGAGGAACTTGAGAA
GGTGATGGGTGCATATGGATATAGCATTGAGCACATATTGATGGTAGACA
TTATACCTGATCCTGCTGTGCGCAAGGCAATGAATGAGATCAATGCGGCT
CAAAGGCTTCAGCTTGCTAGTGTATATAAAGGGGAAGCTGAGAAGATTCT
CCAAGTTAAAAGAGCAGAAGCTGAAGCTGAAGCCAAGTACCTTGGTGGCG
TAGGTGTGGCCAGGCAACGGCAGGCAAATACAGATGGTTTGCGAGAGAAC
ATTTTGAAACTCTC
back to top