FC920243

Overview
NameFC920243
Unique NameFC920243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14527 contig Ccv1_Contig14527:5..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2C_ARATH (Hydroxyacylglutathione hydrolase cytoplasmic OS=Arabidopsis thaliana GN=GLX2-2 PE=1 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.027e-92
Identity = 156/211 (73.93%), Postives = 182/211 (86.26%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            MKIFH+PCL+DNY+YLII+E+T +AAVVDPV+PEK+I +A++              WDHAGGNEKIK++VP IKVYGGSLD VKGCT  V+NGDK ++G  +N+L+LHTPCHTKGHISYYV GKEGE+PAVFTGDTLFVAGCGKFFEG+AEQMYQSLCVTL +LP+PTQVYCGHEYTVKNL FALTVEP+N K+QQKLAWA+ QRQA LPT
Sbjct:    1 MKIFHVPCLQDNYSYLIIDESTGDAAVVDPVDPEKVIASAEKHQAKIKFVLTTHHHWDHAGGNEKIKQLVPDIKVYGGSLDKVKGCTDAVDNGDKLTLGQDINILALHTPCHTKGHISYYVNGKEGENPAVFTGDTLFVAGCGKFFEGTAEQMYQSLCVTLAALPKPTQVYCGHEYTVKNLEFALTVEPNNGKIQQKLAWARQQRQADLPT 211          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_DANRE (Hydroxyacylglutathione hydrolase, mitochondrial OS=Danio rerio GN=hagh PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.652e-61
Identity = 115/219 (52.51%), Postives = 153/219 (69.86%), Query Frame = 1
Query:    7 ALEQRIKMKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEG-EDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            +L ++  MK+  +P L DNY YL+I+E TKEAA+VDPVEP+K+++A K+              WDHAGGNEK+ +++PG+ VYGG  D V   T +V + + F +G+ +NV  L TPCHT GHI Y+VT +   E PAVFTGDTLFVAGCGKFFEG+A++MY++L   LG LP  T+VYCGHEYT+ NL FA  VEP+N  ++ KLAWA+ +   G PT
Sbjct:   37 SLVEQSDMKVELLPALTDNYMYLLIDEETKEAAIVDPVEPQKVVDAVKKHGVKLKTVLTTHHHWDHAGGNEKLVKLMPGLTVYGGD-DRVGALTQKVTHYNTFKVGS-LNVKCLFTPCHTSGHICYFVTKENSTEAPAVFTGDTLFVAGCGKFFEGTADEMYKALIEVLGRLPPETRVYCGHEYTINNLKFARHVEPNNEVIRTKLAWAKEKYDNGEPT 253          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_MOUSE (Hydroxyacylglutathione hydrolase, mitochondrial OS=Mus musculus GN=Hagh PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.768e-60
Identity = 114/212 (53.77%), Postives = 148/212 (69.81%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDP-AVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            MK+  +P L DNY YLII+E T+EAA+VDPV+P+K+IEAAK+              WDHAGGNEK+ ++ PG+KVYGG  D +   TH+V +     +G+ ++V  L TPCHT GHI Y+V+     +P AVFTGDTLFVAGCGKF+EG+A++MY++L   LG LP  T+VYCGHEYTV NL FA  VEP N  +Q+KLAWA+ +   G PT
Sbjct:   50 MKVELLPALTDNYMYLIIDEDTQEAAIVDPVQPQKVIEAAKKHHVKLTTVLTTHHHWDHAGGNEKLVKLEPGLKVYGGD-DRIGALTHKVTHLSTLQVGS-LSVKCLSTPCHTSGHICYFVSKPGSSEPSAVFTGDTLFVAGCGKFYEGTADEMYKALLEVLGRLPPDTKVYCGHEYTVNNLKFARHVEPGNAAIQEKLAWAKEKYAIGEPT 259          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_BOVIN (Hydroxyacylglutathione hydrolase, mitochondrial OS=Bos taurus GN=HAGH PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 3.938e-60
Identity = 111/212 (52.36%), Postives = 147/212 (69.34%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEG-EDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            MK+  +P L DNY YL+I+E TKEAA+VDPV+P+K++E A++              WDHAGGNEK+ ++ PG+KVYGG  D +   TH+V +     +G+ ++V  L TPCHT GHI Y+VT     E PAVFTGDTLFVAGCGKF+EG+A++MY++L   LG LP  T+VYCGHEYT+ NL FA  VEP N  +++KLAWA+ +   G PT
Sbjct:   49 MKVELLPALTDNYMYLLIDEDTKEAAIVDPVQPQKVVETARKHGVKLTTVLTTHHHWDHAGGNEKLVKLEPGLKVYGGD-DRIGALTHKVTHLSTLQVGS-LHVKCLSTPCHTSGHICYFVTKPNSPEPPAVFTGDTLFVAGCGKFYEGTADEMYKALLEVLGRLPADTRVYCGHEYTINNLKFARHVEPDNTAVREKLAWAKEKYSIGEPT 258          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_XENTR (Hydroxyacylglutathione hydrolase, mitochondrial OS=Xenopus tropicalis GN=hagh PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.774e-60
Identity = 114/212 (53.77%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEG-EDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            MK+  IP L DNY YL+I+E +KEAA+VDPV+P+K+++A K+              WDHAGGNEK+ +MV G+KVYGG    +   T +V +   F +G+ ++V  L+TPCHT GHI YYVT     E PAVFTGDTLFVAGCGKFFEG+ E+MY +L   LG LP  T+VYCGHEYT+ NL FA  VEP N  ++QKLAWA+    +G PT
Sbjct:   54 MKVELIPALTDNYMYLLIDEESKEAAIVDPVQPQKVVDAVKKHGVKLTTVLTTHHHWDHAGGNEKLVKMVSGLKVYGGD-SRIGALTQKVSHLTTFQVGS-LHVKCLYTPCHTSGHICYYVTKPNSTEPPAVFTGDTLFVAGCGKFFEGTPEEMYAALIEVLGRLPPETRVYCGHEYTINNLKFARHVEPCNDAIKQKLAWAKETYNSGEPT 263          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_RAT (Hydroxyacylglutathione hydrolase, mitochondrial OS=Rattus norvegicus GN=Hagh PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.334e-59
Identity = 114/216 (52.78%), Postives = 147/216 (68.06%), Query Frame = 1
Query:   16 QRIKMKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDP-AVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            Q+  MKI  +P L DNY YLII+E T+EAAVVDPV+P+K+IE  K+              WDHAGGNEK+ ++ PG+KVYGG  D +   TH+V +     +G+ ++V  L TPCHT GHI Y+V+     +P AVFTGDTLFVAGCGKF+EG+A++MY++L   LG LP  T+V CGHEYTV NL FA  VEP N  +Q+KLAWA+ +   G PT
Sbjct:   46 QQDMMKIELLPALTDNYMYLIIDEDTQEAAVVDPVQPQKVIETVKKHRVKLTTVLTTHHHWDHAGGNEKLVKLEPGLKVYGGD-DRIGALTHKVTHLSTLEVGS-LSVKCLSTPCHTSGHICYFVSKPGSSEPSAVFTGDTLFVAGCGKFYEGTADEMYKALLEVLGRLPPDTKVICGHEYTVNNLKFARHVEPGNTAVQEKLAWAKEKNAIGEPT 259          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_CHICK (Hydroxyacylglutathione hydrolase, mitochondrial OS=Gallus gallus GN=HAGH PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.334e-59
Identity = 113/212 (53.30%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTG-KEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            MK+  +P L DNY YL+I+E TKEAA+VDPV+P+K+++A K+              WDHAGGNEK+ ++  G++VYGG    V   T +V +     +G+ +NV  L TPCHT GHI YYVT     E PAVFTGDTLFVAGCGKFFEG+ E+MY++L   LGSL   T+VYCGHEYT+ NL FA  VEP+NV +Q+KLAWA+ +  +G PT
Sbjct:   51 MKVEVLPALTDNYMYLLIDEETKEAAIVDPVQPQKVLDAVKKHGVKLTSVLTTHHHWDHAGGNEKLVKLETGLRVYGGD-SRVGALTQKVSHLTSLKVGS-LNVKCLCTPCHTSGHICYYVTKPNSSEPPAVFTGDTLFVAGCGKFFEGTPEEMYRALIEILGSLDPETRVYCGHEYTINNLKFARHVEPNNVSIQEKLAWAKAKYDSGEPT 260          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_MACFA (Hydroxyacylglutathione hydrolase, mitochondrial OS=Macaca fascicularis GN=HAGH PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 7.427e-59
Identity = 109/212 (51.42%), Postives = 147/212 (69.34%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEG-EDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            MK+  +P L DNY YL+I++ TKEAA+VDPV+P+K+++AA++              WDHAGGNEK+ ++  G+KVYGG  D +   TH++ +     +G+ +NV  L TPCHT GHI Y+V+   G E PAVFTGDTLFVAGCGKF+EG+A++M ++L   LG LP  T+VYCGHEYT+ NL FA  VEP N  +Q+KLAWA+ +   G PT
Sbjct:   49 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVLDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLQSGLKVYGGD-DRIGALTHKITHLSTLQVGS-LNVKCLATPCHTSGHICYFVSRPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIQEKLAWAKEKYSIGEPT 258          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_HUMAN (Hydroxyacylglutathione hydrolase, mitochondrial OS=Homo sapiens GN=HAGH PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.655e-58
Identity = 108/212 (50.94%), Postives = 147/212 (69.34%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEG-EDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            MK+  +P L DNY YL+I++ TKEAA+VDPV+P+K+++AA++              WDHAGGNEK+ ++  G+KVYGG  D +   TH++ +     +G+ +NV  L TPCHT GHI Y+V+   G E PAVFTGDTLFVAGCGKF+EG+A++M ++L   LG LP  T+VYCGHEYT+ NL FA  VEP N  +++KLAWA+ +   G PT
Sbjct:   49 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGD-DRIGALTHKITHLSTLQVGS-LNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPT 258          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_CALJA (Hydroxyacylglutathione hydrolase, mitochondrial (Fragment) OS=Callithrix jacchus GN=HAGH PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.686e-58
Identity = 109/211 (51.66%), Postives = 144/211 (68.25%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEG-EDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLP 657
            MK+  +P L DNY YL+I++ TKEAA+VDPV+P+K++E AK+              WDHAGGNEK+ ++ PG+KVYGG  D + G TH+  +     +G+ +NV  L TPCHT GHI Y+VT   G + PAVFTGDTLFVAGCGKF+EG+A++M ++L   LG  P  T+VYCGHEYT+ NL FA  VE  N  +Q+KLAWA+ +   G P
Sbjct:   21 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVEEAKKHGVMLTTVLTTHHHWDHAGGNEKLVKLEPGLKVYGGD-DRIGGLTHKGTHLSTLQVGS-LNVKCLSTPCHTSGHICYFVTKPGGSQPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRFPPDTRVYCGHEYTINNLKFARHVESGNAAVQEKLAWAKEKYSIGEP 229          
The following BLAST results are available for this feature:
BLAST of FC920243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
GLO2C_ARATH1.027e-9273.93Hydroxyacylglutathione hydrolase cytoplasmic OS=Ar... [more]
GLO2_DANRE4.652e-6152.51Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_MOUSE1.768e-6053.77Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_BOVIN3.938e-6052.36Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_XENTR8.774e-6053.77Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_RAT3.334e-5952.78Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_CHICK3.334e-5953.30Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_MACFA7.427e-5951.42Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_HUMAN1.655e-5850.94Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_CALJA3.686e-5851.66Hydroxyacylglutathione hydrolase, mitochondrial (F... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005G09EF RVDevelop1 Citrus clementina cDNA clone C32005G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920243 ID=FC920243; Name=FC920243; organism=Citrus clementina; type=EST; length=662bp
CTTCGTGCACTTGAGCAGAGAATAAAAATGAAAATCTTTCATATTCCTTG
TTTGGAAGACAACTATGCCTACCTGATCATTGAAGAGACCACTAAAGAAG
CTGCAGTTGTTGATCCAGTGGAGCCAGAGAAGATCATTGAGGCTGCCAAA
CAACACGGTGTCAATCTCACCACCGTTCTCACTACTCATCATCACTGGGA
CCATGCTGGAGGGAACGAAAAGATAAAGGAGATGGTGCCTGGGATTAAGG
TGTATGGTGGCTCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAA
AATGGTGATAAGTTCTCAATTGGGGCTCATGTCAATGTACTGTCTCTTCA
CACGCCTTGCCATACCAAAGGTCACATAAGTTATTATGTGACTGGCAAAG
AGGGAGAAGACCCAGCTGTTTTCACTGGAGACACACTGTTTGTCGCTGGT
TGTGGAAAATTTTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTG
CGTAACATTGGGCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATG
AGTATACAGTGAAGAACCTACTATTTGCTCTTACTGTCGAACCAAGCAAT
GTGAAGCTACAGCAAAAATTGGCGTGGGCTCAGAACCAGCGGCAAGCCGG
CCTGCCAACCAT
back to top