FC920244

Overview
NameFC920244
Unique NameFC920244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14106 contig Ccv1_Contig14106:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920244 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.798e-50
Identity = 114/204 (55.88%), Postives = 136/204 (66.67%), Query Frame = 3
Query:   36 MTALADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIP 638
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG  S  + L+P ILS DSF+FSIP
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAG-TSKTTGLDPSILSFDSFDFSIP 195          
BLAST of FC920244 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.596e-49
Identity = 112/204 (54.90%), Postives = 135/204 (66.18%), Query Frame = 3
Query:   36 MTALADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFL-PPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIP 638
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  + PP    E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG  S  + L+P ILS DSF+FSIP
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAG-TSKTTGLDPSILSFDSFDFSIP 195          
BLAST of FC920244 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.865e-39
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 3
Query:  174 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP 638
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIP 196          
BLAST of FC920244 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.277e-31
Identity = 79/188 (42.02%), Postives = 110/188 (58.51%), Query Frame = 3
Query:   99 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP 638
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG+ +N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIP 219          
BLAST of FC920244 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 67/150 (44.67%), Postives = 92/150 (61.33%), Query Frame = 3
Query:  174 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH 614
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAY 185          
The following BLAST results are available for this feature:
BLAST of FC920244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN1.798e-5055.88Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI2.596e-4954.90Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH1.865e-3953.50Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH0_CHEAL9.277e-3142.02Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
CLH2_ARATH3.898e-2944.67Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC32005G11EF RVDevelop1 Citrus clementina cDNA clone C32005G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920244 ID=FC920244; Name=FC920244; organism=Citrus clementina; type=EST; length=691bp
GGTAACAAACTCAATACACAAACCATTTAGACTCAATGACAGCATTAGCC
GATAGCAAGCCCGTCTCCGTTGAAGCTAAGCCTGGTTTGGCAACGGCCTT
ACTATCAGTTTTTTCAAGTGGACCTTATTCTCCGAAACTCAAGACAGTGA
ATAAACCATGGTTTAATAGTTTTCCTCCAAAGCCGTTGAATATTGTTTAT
CCAGAAGAAAAAGGAACATATGAAGTTATTTTGTTCTTCCACGGCACTGC
TCTCAGCAACACAAGCTATTCCAATCTCTTAGACCACTTGGCTTCCCATG
GATACATCGTTGTTGCCCCTCAGTTATACGATTTTCTGCCGCCGAAAGGA
AACGGAGAAGTTAACGATGCAGCAAACGTCCTCAACTGGTTATCGACAGG
CCTTCAATCAGAACTCCCGGAAAATGTTGAAGCTAACCTAAACTACGTTG
CTCTTATGGGACACAGTCGCGGAGGACTAATAGCGTTCGGTCTGGCACTT
GGCTATGCAACAAATCCTCCAGTTAGCATTAAAATTTCAGCATTAGTAGG
CATAGACCCAGTTGCCGGGTTAGCCAGCGTTCATAGTGAACTTGAACCCC
CGATTCTCAGTCATGACTCATTCGAGTTCTCAATTCCTGTTACTGTAATT
GGCACCGGACTCGGTGGTGTGACAAGTGCATGCAGCCTTGT
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