FC920249

Overview
NameFC920249
Unique NameFC920249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2430 contig Ccv1_Contig2430:36..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920249 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.075e-50
Identity = 97/143 (67.83%), Postives = 111/143 (77.62%), Query Frame = 3 
Query:  267 TKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKELDFVQAAGLPLA 695
            T   ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPT                 K+ KEGDEVY +++EKALEGPKQFGSLAEYTAVEE+LLA KPK +DF QAAGLPLA
Sbjct:   69 TADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLA 211
The following BLAST results are available for this feature:
BLAST of FC920249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QORL_ARATH4.075e-5067.83Quinone oxidoreductase-like protein At1g23740, chl... [more]
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Properties
Property NameValue
Genbank descriptionC32005H04EF RVDevelop1 Citrus clementina cDNA clone C32005H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920249 ID=FC920249; Name=FC920249; organism=Citrus clementina; type=EST; length=695bp
GAAGCATAAGCCGTTGGTGAGAACTACAACGTACGGTTGCAACAAATGGA
GACCATGCTTACTACTACTGCTTCTAACTCACAATCTTTCATTCTATCTC
CTCCACCAAATTAAATTCATTTTCTCGAAAATTTTCCGTCGGTTTCTCGG
GAAACAAAAACAGGAAAAAAGTAACCACCCTTAAGCAAGGCTCATTTTCT
TACCTTCCTCTTGGAGTTCAAGCAAGTGCATCACAAGCTGCAGCATCGTC
CACTGAGGCTGAGCCCACTAAAGTGGGAACTGTTCCAAGCGAGATGAAGG
CTTGGCTGTATGGGGAATATGGGGGCGTTGATGTTTTGAAGTTCGACGAG
AAAGTGACAGTGCCTCAAGTGAAGGAGGATCAAGTGTTGATCAAAGTTGT
CGCTGCTGCCCTTAATCCTGTTGATGGGAAGAGAAGGCAGGGCAAGTTCA
AGGCCACTGATTCTCCTCTCCCGACTGTTCCAGGCTATGATGTTGCTGGT
GTGGTGGTAAAGGTTGGCACTCAAGTGAAGGAATTTAAGGAGGGGGATGA
AGTATACGGGGACATAAATGAGAAAGCTTTGGAAGGGCCCAAACAGTTTG
GCTCTTTGGCGGAGTACACTGCGGTTGAAGAGAGGTTACTGGCCCCAAAA
CCTAAAGAATTGGACTTTGTTCAGGCTGCTGGCCTTCCGCTCGCT
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