FC920251

Overview
NameFC920251
Unique NameFC920251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920251_ssr434 microsatellite FC920251_ssr434:434..448. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14767 contig Ccv1_Contig14767:60..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.299e-87
Identity = 163/212 (76.89%), Postives = 171/212 (80.66%), Query Frame = 3
Query:   27 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXGRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIWQLL 662
            MAM RVAS+A  A                    G KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DL      GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRI +LL
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASP---GPKKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLL 209          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 9.309e-86
Identity = 155/212 (73.11%), Postives = 173/212 (81.60%), Query Frame = 3
Query:   27 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXGRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIWQLL 662
            MAM++ A + I A +                    KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRI +LL
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLL 212          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.538e-80
Identity = 145/179 (81.01%), Postives = 158/179 (88.27%), Query Frame = 3
Query:  126 GRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIWQLL 662
            G KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRI +LL
Sbjct:   26 GSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLL 204          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.844e-80
Identity = 139/179 (77.65%), Postives = 158/179 (88.27%), Query Frame = 3
Query:  126 GRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIWQLL 662
            G KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+LMRIL+L+RNFLPGHHQ+++GEWNVAG+A+R YDLEGKTVGTVG GRI +LL
Sbjct:   28 GSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLL 206          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 6.687e-76
Identity = 137/179 (76.54%), Postives = 153/179 (85.47%), Query Frame = 3
Query:  126 GRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIWQLL 662
            G KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+A+RAYDLEGKTVGTVG GR  +LL
Sbjct:   27 GSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLL 205          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.270e-50
Identity = 97/174 (55.75%), Postives = 124/174 (71.26%), Query Frame = 3
Query:  135 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXG--LTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRI 650
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL+     G  ++V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+ISG WNVA +A  ++D+EGK + T+G GRI
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRI 175          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.335e-49
Identity = 93/170 (54.71%), Postives = 120/170 (70.59%), Query Frame = 3
Query:  147 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRI 650
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL+       G+TVAEVTGSNVVSVAE  +M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRI
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRI 171          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.100e-49
Identity = 92/174 (52.87%), Postives = 121/174 (69.54%), Query Frame = 3
Query:  135 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRI 650
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DLN       G+TVAEVTGSNVVSVAE  LM IL+LVRNF+P H Q+  G W+VA  A   +DLEGK VGTVG GRI
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRI 176          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 82/173 (47.40%), Postives = 118/173 (68.21%), Query Frame = 3
Query:  135 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRI 650
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRI
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRI 177          
BLAST of FC920251 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 82/173 (47.40%), Postives = 118/173 (68.21%), Query Frame = 3
Query:  135 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRI 650
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRI
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRI 177          
The following BLAST results are available for this feature:
BLAST of FC920251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
FDH_SOLTU1.299e-8776.89Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_ARATH9.309e-8673.11Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH1_ORYSJ1.538e-8081.01Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ5.844e-8077.65Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_HORVU6.687e-7676.54Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_PICAN1.270e-5055.75Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH_EMENI5.335e-4954.71Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_NEUCR9.100e-4952.87Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH2_YEAST1.273e-4247.40Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
FDH1_YEAST1.273e-4247.40Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005H07EF RVDevelop1 Citrus clementina cDNA clone C32005H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920251 ID=FC920251; Name=FC920251; organism=Citrus clementina; type=EST; length=662bp
TGAGTGACAAATTATATATTTGGGAGATGGCCATGAAGAGAGTAGCTAGC
TCTGCAATTAACGCTTTTGCTTCGTCGGGATATCTTCGTTCATCGTCGAG
GTTTTCTCGACACTATGCTTCTTCTGGAAGAAAGAAGATTGTTGGGGTGT
TCTACAAGGGCAATGAATACGCTTCAATGAATCCCAACTTTCTTGGTTGT
GTGGAGGGAGGCTGTGGTCTGCGTGAATGGCTGGAATCGAAAGGTCACCA
ATATATTGTCACTGATGACAAAGAGGGACCAGACTGTGAACTAGAGAAAC
ATATTCCTGATCTCCACGTCCTCATATCTACCCCCTTCCACCCTGCCTAT
GTTACGGCGGAAAGGATTAAGAAGGCCAAAAATTTGCAACTGCTTCTCAC
TGCTGGAGTTGGCTCTGATCATATTGATCTAAATGCTGCTGCTGCTGCTG
GTTTAACTGTTGCTGAAGTTACTGGAAGCAATGTGGTTTCAGTTGCTGAG
GACGAGCTTATGAGAATCCTTATTCTTGTCCGTAATTTCTTACCTGGACA
CCATCAAGTTATCAGTGGGGAATGGAATGTTGCCGGTGTTGCTTATAGAG
CTTATGATCTTGAAGGAAAGACAGTGGGAACTGTTGGTTGTGGACGCATT
TGGCAGCTGTTG
back to top