FC920255

Overview
NameFC920255
Unique NameFC920255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13421 contig Ccv1_Contig13421:860..1513. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH_DICDI (Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 9.940e-72
Identity = 127/210 (60.48%), Postives = 158/210 (75.24%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALS 654
            +L +LY++Y+ EKLMEH+KLF +RLN+PK+I+AC   Q W +LTYLYI YDE DNA  T++NHS EAWDH+ FK+   KVA ++LYY A+ FYL+E P LINDLL+VL+ R+DHTR V ++R  GHL LVKPY+            EALNE+YVEEEDYE LR SID + NF  I LAQK+EKHELLE RR+AAY+YKK  RW QS+ LS
Sbjct: 1320 ELAILYSKYKEEKLMEHLKLFYSRLNVPKVIKACQANQQWPQLTYLYIHYDEHDNAIQTMINHSIEAWDHVLFKETIPKVAKLDLYYSAISFYLEEQPLLINDLLSVLSPRIDHTRAVTLIRSLGHLPLVKPYLVSAQDQNVAALNEALNELYVEEEDYESLRSSIDANSNFGTIALAQKLEKHELLEFRRIAAYLYKKNNRWAQSVELS 1529          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH_MOUSE (Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 2.713e-61
Identity = 108/209 (51.67%), Postives = 151/209 (72.25%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++++ +K+ EH++LF +R+NIPK++RA ++   W EL +LY +Y+E+DNA  T+MNH  +AW   QFKD+  KVANVELYYKA+ FYL+  P L+NDLL VL+ R+DHTR V+   K   L LVKPY+            E+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L
Sbjct: 1319 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVEL 1527          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH1_HUMAN (Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5)

HSP 1 Score: 233.802 bits (595), Expect = 6.044e-61
Identity = 107/209 (51.20%), Postives = 151/209 (72.25%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++++ +K+ EH++LF +R+NIPK++RA ++   W EL +LY +Y+E+DNA  T+MNH  +AW   QFKD+  KVANVELYY+A+ FYL+  P L+NDLL VL+ R+DHTR V+   K   L LVKPY+            E+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L
Sbjct: 1319 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVEL 1527          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH1_BOVIN (Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.044e-61
Identity = 107/209 (51.20%), Postives = 151/209 (72.25%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++++ +K+ EH++LF +R+NIPK++RA ++   W EL +LY +Y+E+DNA  T+MNH  +AW   QFKD+  KVANVELYY+A+ FYL+  P L+NDLL VL+ R+DHTR V+   K   L LVKPY+            E+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L
Sbjct: 1319 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVEL 1527          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH_RAT (Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 2.297e-60
Identity = 107/209 (51.20%), Postives = 150/209 (71.77%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++++ +K+ EH++LF +R+NIPK++RA ++   W EL +LY +Y+E+DNA  T+MNH  +AW   QFKD+  KVANVELYYKA+ FYL+  P L+NDLL VL+ R+ HTR V+   K   L LVKPY+            E+LN +++ EEDY+ LR SID +DNFD I LAQ++EKHEL+E RR+AAY++K   RWKQS+ L
Sbjct: 1319 ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLMVLSPRLAHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVEL 1527          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH_DROME (Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.728e-60
Identity = 109/209 (52.15%), Postives = 144/209 (68.90%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++++  K+ EH++LF +R+NIPK++RA +    W EL +LY +Y+E+DNA   +M H  EAW    FKD+  KVAN+ELYYKA+ FYL   P L+ND+L VLA R+DHTR V    K G+L LVKPY+            EALN + ++EEDY+ LR SID  DNFD I LAQK+EKHEL E RR+AAY+YK   RWKQS+ L
Sbjct: 1320 ELAILYSKFKPSKMREHLELFWSRVNIPKVLRAAESAHLWSELVFLYDKYEEYDNAVLAMMAHPTEAWREGHFKDIITKVANIELYYKAIEFYLDFKPLLLNDMLLVLAPRMDHTRAVSYFSKTGYLPLVKPYLRSVQSLNNKAINEALNGLLIDEEDYQGLRNSIDGFDNFDNIALAQKLEKHELTEFRRIAAYLYKGNNRWKQSVEL 1528          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH2_HUMAN (Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.255e-58
Identity = 107/209 (51.20%), Postives = 146/209 (69.86%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++++ +K++EH++LF +R+NIPK++RA ++   W EL +LY +Y+E+DNA  T+M+H  EAW   QFKD+  KVANVEL Y+A+ FYL   P LINDLL VL+ R+DHT  V    KAG L LVKPY+            EALN +  EEEDY+ LR SID +DNFD I LAQ++EKH+L+E R +AAY+YK    W QS+ L
Sbjct: 1319 ELAILYSKFKPQKMLEHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAVLTMMSHPTEAWKEGQFKDIITKVANVELCYRALQFYLDYKPLLINDLLLVLSPRLDHTWTVSFFSKAGQLPLVKPYLRSVQSHNNKSVNEALNHLLTEEEDYQGLRASIDAYDNFDNISLAQQLEKHQLMEFRCIAAYLYKGNNWWAQSVEL 1527          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH_CAEEL (Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.393e-57
Identity = 105/209 (50.24%), Postives = 146/209 (69.86%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++Y+ EK+ EH++LF +R+NIPK++RA ++   W EL +LY +Y+E+DNAA T+M H  E+W    FK+V  KVANVELYYKA+ FYL   P L+NDLL VL+ R+DH+R V    K   + LVKPY+            EALN++ ++EED+  LR SI+  DNFD I LAQ++EKH L+E RR++AY++K   RWKQSI L
Sbjct: 1321 ELAILYSKYKPEKMREHLELFWSRVNIPKVLRAAEQAHLWSELVFLYDKYEEYDNAALTMMQHPTESWREQHFKEVIAKVANVELYYKAMQFYLDYKPLLLNDLLTVLSPRLDHSRTVLFFNKLKQIPLVKPYLRQVQNLNNKAINEALNQLLIDEEDHAGLRSSIEAQDNFDNITLAQQLEKHPLVEFRRISAYLFKGNNRWKQSIEL 1529          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH_SCHPO (Probable clathrin heavy chain OS=Schizosaccharomyces pombe GN=chc1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.646e-56
Identity = 103/213 (48.36%), Postives = 146/213 (68.54%), Query Frame = 1
Query:   16 FSPQLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALS 654
            F  +L +LYA+Y+ E++MEH+KLF  RLN+ K+IRACD+   W E  +LY+    +DNAA  +M   PEA+DH  FKD+ V VAN+ELYY+A++FYL++HP L+ DLL  L  R+DH RV+ I  K+ +  L+  +M             A N++ +E EDY+ L++SI+ +D+FD I LA+++EKH LLE RR+AAYIY+K  RW QSI LS
Sbjct: 1312 FYTELAILYAKYKPERMMEHLKLFWGRLNMAKVIRACDQMHLWNEAVFLYVHDQSYDNAAAVMMEQ-PEAFDHQSFKDIIVHVANLELYYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAVNHAYNDLLIEMEDYQSLQDSIENYDHFDAIALARRLEKHSLLEFRRIAAYIYRKNKRWTQSIELS 1523          
BLAST of FC920255 vs. ExPASy Swiss-Prot
Match: CLH_YEAST (Clathrin heavy chain OS=Saccharomyces cerevisiae GN=CHC1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.650e-50
Identity = 87/209 (41.63%), Postives = 145/209 (69.38%), Query Frame = 1
Query:   25 QLGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMXXXXXXXXXXXXEALNEIYVEEEDYERLRESIDMHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIAL 651
            +L +LY++Y  +K  EH+KLF +R+NIPK+IRA ++   W EL +LY  YDE+DNAA T++  S +  DH  FK+V VKV+N+E+YYKA++FY++ HP L+ DLL  L  R+D  R V I  K+ +L L+KP++            +A +++ +EEEDY+ L++++D +D FDQ+GLA ++E H+L+  +++ A +Y++  +W +S+++
Sbjct: 1325 ELAILYSKYEPDKTFEHLKLFWSRINIPKVIRAVEQAHLWSELVFLYAHYDEWDNAALTLIEKSTKDLDHAYFKEVVVKVSNLEIYYKAINFYVKFHPSLLVDLLTSLTPRLDIPRTVKIFSKSDNLPLIKPFLINVLPKNNSVVNQAYHDLMIEEEDYKALQDAVDSYDKFDQLGLASRLESHKLIFFKKIGALLYRRNKKWAKSLSI 1533          
The following BLAST results are available for this feature:
BLAST of FC920255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CLH_DICDI9.940e-7260.48Clathrin heavy chain OS=Dictyostelium discoideum G... [more]
CLH_MOUSE2.713e-6151.67Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=... [more]
CLH1_HUMAN6.044e-6151.20Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=... [more]
CLH1_BOVIN6.044e-6151.20Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 ... [more]
CLH_RAT2.297e-6051.20Clathrin heavy chain 1 OS=Rattus norvegicus GN=Clt... [more]
CLH_DROME8.728e-6052.15Clathrin heavy chain OS=Drosophila melanogaster GN... [more]
CLH2_HUMAN6.255e-5851.20Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 P... [more]
CLH_CAEEL1.393e-5750.24Probable clathrin heavy chain 1 OS=Caenorhabditis ... [more]
CLH_SCHPO7.646e-5648.36Probable clathrin heavy chain OS=Schizosaccharomyc... [more]
CLH_YEAST1.650e-5041.63Clathrin heavy chain OS=Saccharomyces cerevisiae G... [more]
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Properties
Property NameValue
Genbank descriptionC32005H11EF RVDevelop1 Citrus clementina cDNA clone C32005H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920255 ID=FC920255; Name=FC920255; organism=Citrus clementina; type=EST; length=654bp
GAGGACATATGGGTATTTTCACCTCAGTTGGGAGTTCTTTATGCCAGATA
TCGTTATGAGAAGCTTATGGAGCACATCAAATTGTTTTCCACCCGCCTTA
ATATCCCCAAGCTTATTCGTGCTTGTGATGAGCAGCAGCACTGGAAGGAA
CTCACCTATTTGTATATCCAGTATGATGAGTTTGATAATGCAGCAACTAC
CATTATGAACCATTCTCCCGAAGCATGGGATCACATGCAGTTCAAAGACG
TTGCTGTCAAAGTTGCTAATGTTGAGCTATATTATAAGGCCGTTCACTTC
TACTTGCAAGAACATCCTGACCTCATCAACGATCTACTTAATGTGCTTGC
ACTTCGTGTGGACCATACACGTGTTGTTGACATTATGCGAAAGGCTGGTC
ACCTTCTCCTTGTGAAGCCCTACATGGTTGCAGTTCAGAGCAACAATGTT
TCTGCTGTGAACGAGGCTTTGAATGAGATTTACGTTGAGGAGGAGGACTA
CGAGAGATTGCGTGAATCTATTGATATGCATGATAACTTTGATCAGATTG
GCCTTGCACAGAAGATTGAGAAACATGAGCTTTTGGAAATGAGACGAGTC
GCTGCATATATTTACAAAAAGGCTGGCAGATGGAAGCAATCTATTGCACT
GTCA
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