FC920263

Overview
NameFC920263
Unique NameFC920263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920263_ssr129 microsatellite FC920263_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12798 contig Ccv1_Contig12798:104..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL2_ARATH (Leucine aminopeptidase 2, chloroplastic OS=Arabidopsis thaliana GN=At4g30910 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.443e-54
Identity = 107/173 (61.85%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  146 LFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASWNCFG 664
            L+C  K   AH+IA ATLGLT+   +D  KISF+ KE+DV EWKGDILAVGVTEKDM KD NSKF+N ILKKLDA LGGLL++ S+EEDF+GK GQSTV+RLPG+GSKRVGLIGLG+SAS    F+SLGE+                LASS+  SDESKL++AS +AS    G
Sbjct:   49 LYCSSKAT-AHTIAHATLGLTQANSVDHPKISFSGKEIDVTEWKGDILAVGVTEKDMAKDANSKFENPILKKLDAHLGGLLADVSAEEDFSGKPGQSTVLRLPGLGSKRVGLIGLGKSASTPSAFQSLGEAVAAAAKASQASSVAVVLASSESFSDESKLSSASDIASGTVLG 220          

HSP 2 Score: 33.113 bits (74), Expect = 1.443e-54
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESK 701
            GTVLG FED+RY+SESK
Sbjct:  216 GTVLGLFEDSRYKSESK 232          
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL3_ARATH (Leucine aminopeptidase 3, chloroplastic OS=Arabidopsis thaliana GN=At4g30920 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 2.452e-54
Identity = 105/165 (63.64%), Postives = 125/165 (75.76%), Query Frame = 2
Query:  170 MAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASWNCFG 664
            MAH+I+ ATLGLT+   +D  KISF+ KE+DV EWKGDILAVGVTEKDM KD NSKF+N ILKKLDA LGGLL++ SSEEDF+GK GQSTV+RLPG+GSKRVGLIGLG+SAS    F+SLGE+                LASS+ +S+ESKL +ASA+AS    G
Sbjct:   57 MAHTISHATLGLTQANSVDHPKISFSGKEIDVTEWKGDILAVGVTEKDMAKDVNSKFENPILKKLDAHLGGLLADVSSEEDFSGKPGQSTVLRLPGLGSKRVGLIGLGKSASTPSAFQSLGEAVAAAAKASQASSVAVVLASSESVSNESKLCSASAIASGTVLG 221          

HSP 2 Score: 33.113 bits (74), Expect = 2.452e-54
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESK 701
            GTVLG FED+RY+SESK
Sbjct:  217 GTVLGLFEDSRYKSESK 233          
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL2_SOLLC (Leucine aminopeptidase 2, chloroplastic OS=Solanum lycopersicum GN=LAPA2 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.003e-52
Identity = 104/175 (59.43%), Postives = 125/175 (71.43%), Query Frame = 2
Query:  140 PLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASWNCFG 664
            PL   R K RMAHSIAR TLGLT   Q D  KISFAAKE+D+VEWKGDIL VG TEKD+ +D NSKFQN +L+KLD++L GLLSEASSEEDF+GKAGQST++RLPG+GSKR+ L+GLG   S    +R LGE+                LAS+DGLS E KL++ASA+ +    G
Sbjct:   36 PLCSRRAK-RMAHSIARDTLGLTHTNQSDAPKISFAAKEIDLVEWKGDILTVGATEKDLARDGNSKFQNPLLQKLDSKLSGLLSEASSEEDFSGKAGQSTILRLPGLGSKRIALVGLGSPTSSTAAYRCLGEAAAAAAKSAQASNIAIALASTDGLSAELKLSSASAITTGAVLG 209          

HSP 2 Score: 33.8834 bits (76), Expect = 1.003e-52
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESK 701
            G VLGTFEDNR++SESK
Sbjct:  205 GAVLGTFEDNRFKSESK 221          
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL1_ARATH (Leucine aminopeptidase 1 OS=Arabidopsis thaliana GN=PM25 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.577e-47
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 2
Query:  170 MAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            MAH     TLGLT+P   +P KISF AKE+DV+EWKGDIL VGVTEKD+ KD NSKF+N IL K+DA L GLL++ SSEEDFTGK GQSTV+RLPG+GSKR+ LIGLGQS S    F SLGE+                LASS  +SDESKL++ SA+AS
Sbjct:    1 MAH-----TLGLTQPNSTEPHKISFTAKEIDVIEWKGDILVVGVTEKDLAKDGNSKFENPILSKVDAHLSGLLAQVSSEEDFTGKPGQSTVLRLPGLGSKRIALIGLGQSVSSPVAFHSLGEAVATVSKASQSTSAAIVLASS--VSDESKLSSVSALAS 153          

HSP 2 Score: 30.4166 bits (67), Expect = 2.577e-47
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESK 701
            G VLG FED RY+SESK
Sbjct:  154 GIVLGLFEDGRYKSESK 170          
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL2_ORYSJ (Leucine aminopeptidase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0794700 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.944e-45
Identity = 94/174 (54.02%), Postives = 118/174 (67.82%), Query Frame = 2
Query:  161 KLRMAHSIARAT-----LGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSA-SRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVASWNCFG 664
            + RM H+ A A      LGLTKP  ++P ++SFAAK+V+  EWKGDILA+ VTE D+ K  +SKF+N++LKKLD QLGGLLSEAS+EEDFTGKAGQS V+RLPG G KRVGLIGLGQ+A S     + +GES                 AS  G+ ++ KLTAA+A+AS    G
Sbjct:   64 RARMGHTAAAAAAAGPALGLTKPNAVEPPQVSFAAKDVEFSEWKGDILAIAVTENDLVKGSDSKFENAVLKKLDGQLGGLLSEASAEEDFTGKAGQSVVLRLPGQGFKRVGLIGLGQNAPSTTTACKGIGESVASVAKSAQASSAAIVFASVGGIQEDFKLTAAAAIASGTVLG 237          

HSP 2 Score: 31.5722 bits (70), Expect = 3.944e-45
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESKNLY 710
            GTVLG  ED+RY+SESK ++
Sbjct:  233 GTVLGLHEDSRYKSESKKVH 252          
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL_SOLTU (Leucine aminopeptidase, chloroplastic OS=Solanum tuberosum GN=LAP PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.634e-43
Identity = 89/170 (52.35%), Postives = 117/170 (68.82%), Query Frame = 2
Query:  140 PLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            PL   R K R+ H IA  TLGLT+P + D  KIS  AK+ DVV+W+GD+LA+G TE D+ +DDNSKF+N +L++LD++L GLLS ASSEEDF+GK+GQS  +RLPG    R+ L+GLG SAS    + SLGE+                LAS+DGLS ESK+ +ASA+A+
Sbjct:   41 PLCSRRSK-RIVHCIAGDTLGLTRPNESDAPKISIGAKDTDVVQWQGDLLAIGATENDLARDDNSKFKNPLLQRLDSKLNGLLSAASSEEDFSGKSGQSINLRLPG---GRITLVGLGSSASSPTSYHSLGEAAAAAAKSAQARNIAVSLASTDGLSAESKINSASAIAT 206          

HSP 2 Score: 31.5722 bits (70), Expect = 4.634e-43
Identity = 13/17 (76.47%), Postives = 15/17 (88.24%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESK 701
            G +LG FEDNR+RSESK
Sbjct:  207 GVMLGIFEDNRFRSESK 223          
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL1_SOLLC (Leucine aminopeptidase 1, chloroplastic OS=Solanum lycopersicum GN=LAPA1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.269e-42
Identity = 87/173 (50.29%), Postives = 116/173 (67.05%), Query Frame = 2
Query:  131 PPPPLLFCRGKLRMAHSIARATLGLTKPAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGKDDNSKFQNSILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGIGSKRVGLIGLGQSASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDGLSDESKLTAASAVAS 649
            P  PL   R K R+ H IA  TLGLT+P + D  KIS  AK+  VV+W+GD+LA+G TE DM +D+NSKF+N +L++LD++L GLLS ASSEEDF+GK+GQS  +R PG    R+ L+GLG SAS    + SLG++                LAS+DGLS ESK+ +ASA+A+
Sbjct:   38 PVTPLCSKRSK-RIVHCIAGDTLGLTRPNESDAPKISIGAKDTAVVQWQGDLLAIGATENDMARDENSKFKNPLLQQLDSELNGLLSAASSEEDFSGKSGQSVNLRFPG---GRITLVGLGSSASSPTSYHSLGQAAAAAAKSSQARNIAVALASTDGLSAESKINSASAIAT 206          

HSP 2 Score: 33.4982 bits (75), Expect = 2.269e-42
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESK 701
            G VLG+FEDNR+RSESK
Sbjct:  207 GVVLGSFEDNRFRSESK 223          
BLAST of FC920263 vs. ExPASy Swiss-Prot
Match: AMPL1_ORYSJ (Putative leucine aminopeptidase 1 OS=Oryza sativa subsp. japonica GN=Os12g0434400 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.567e-26
Identity = 73/158 (46.20%), Postives = 96/158 (60.76%), Query Frame = 2
Query:  212 PAQIDPLKISFAAKEVDVVEWKGDILAVGVTEKDMGK--DDNSKFQN--SILKKLDAQLGGLLSEASSEEDFTGKAGQSTVIRLPGI----GSKRVGLIGLGQS-ASRAGDFRSLGESXXXXXXXXXXXXXXXXLASSDG---LSDESKLTAASAVAS 649
            P  +DP +ISFAAK++D+ EW+GDILAV VTE D+ K    +S+F N  + L KLD +LGGLLSEAS+EE+F G+AGQS  +RLP      G KRV L+G+G +  S A   RS GE+                LAS        ++ +L AA+AVAS
Sbjct:    2 PNVVDPPQISFAAKDMDLTEWEGDILAVLVTETDVSKATSSSSRFTNAAAALAKLDGELGGLLSEASAEEEFAGRAGQSVALRLPTAPGLHGFKRVCLVGVGNNMPSSAAACRSTGETIAAVAKSAQARSAAVALASPPPGWVQGEDLRLNAAAAVAS 159          

HSP 2 Score: 28.1054 bits (61), Expect = 7.567e-26
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  651 GTVLGTFEDNRYRSESKNLY 710
            G VLG  ED RY+S+SK ++
Sbjct:  160 GVVLGLHEDRRYKSDSKKVH 179          
The following BLAST results are available for this feature:
BLAST of FC920263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AMPL2_ARATH1.443e-5461.85Leucine aminopeptidase 2, chloroplastic OS=Arabido... [more]
AMPL3_ARATH2.452e-5463.64Leucine aminopeptidase 3, chloroplastic OS=Arabido... [more]
AMPL2_SOLLC1.003e-5259.43Leucine aminopeptidase 2, chloroplastic OS=Solanum... [more]
AMPL1_ARATH2.577e-4761.25Leucine aminopeptidase 1 OS=Arabidopsis thaliana G... [more]
AMPL2_ORYSJ3.944e-4554.02Leucine aminopeptidase 2, chloroplastic OS=Oryza s... [more]
AMPL_SOLTU4.634e-4352.35Leucine aminopeptidase, chloroplastic OS=Solanum t... [more]
AMPL1_SOLLC2.269e-4250.29Leucine aminopeptidase 1, chloroplastic OS=Solanum... [more]
AMPL1_ORYSJ7.567e-2646.20Putative leucine aminopeptidase 1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC32006A10EF RVDevelop1 Citrus clementina cDNA clone C32006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920263 ID=FC920263; Name=FC920263; organism=Citrus clementina; type=EST; length=718bp
GATGTCCGCCATTGTCGTATCTTTGACGACTTGCCTCTCTTGGTCTTCTT
CACCATCATCGTCTTCTTTGTTATTCTCGAAATTAGGATTAGGATCTGCA
GCTGCTTTTAGACGTTATTGTGCGCCGTCACCACCACCACCCTTGTTGTT
TTGTAGAGGAAAGCTCAGGATGGCTCACTCTATTGCTCGTGCCACTCTTG
GCCTCACTAAGCCTGCTCAAATCGACCCTCTCAAGATCTCTTTTGCCGCA
AAAGAGGTTGATGTGGTGGAATGGAAAGGTGATATACTTGCAGTGGGTGT
CACAGAGAAAGACATGGGCAAGGATGATAATTCAAAATTCCAGAACTCAA
TTTTGAAAAAGCTAGATGCCCAATTGGGCGGTCTTTTATCTGAAGCTTCT
TCTGAGGAGGATTTCACTGGAAAAGCTGGCCAGTCAACTGTTATTAGACT
CCCTGGCATTGGCTCCAAAAGGGTAGGCTTGATTGGTCTAGGCCAGTCAG
CTTCAAGGGCCGGGGACTTTCGCAGTCTTGGAGAGTCTGTTGCTGCGGCT
GCAAAGGCTGCTCAAGCCAGCAACGTTGCTGTTGTGCTTGCCTCTTCTGA
CGGTCTCTCAGATGAATCAAAGCTTACTGCTGCTTCGGCAGTGGCATCCT
GGAACTGTTTTGGGGACATTTGAAGATAATCGGTATAGGTCTGAGTCAAA
GAACCTGTATCACTCAGT
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