FC920269

Overview
NameFC920269
Unique NameFC920269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig724 contig Ccv1_Contig724:12..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920269 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  307 CLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWVIDF 624
            C+ RYL A  W+V  AKK + +TL WR  +    +  +EI  E  TGK    G+ D+ GR  L L P  QNT +   Q+RHLV+ +E AI  +P G E +A +I+F
Sbjct:  637 CILRYLRATKWHVSNAKKRIVDTLVWRRHFGVNNMDPDEIQEENATGKQVLLGY-DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINF 741          
BLAST of FC920269 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 41/133 (30.83%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  244 KELKAAIGPLYGRS-LQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTYRPEEIR-WNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQM--RHLVYLIENAI--LNLPEGQEQMAWVIDF 624
            KE+K+    L   + + +C+D C  RYL ARN+ V K++KML +TL+WR  +RP++I+   +I   G  G ++     D+ GR ++   P      ++ +++  ++LVY +E     ++ P+G EQ  +++D+
Sbjct:   53 KEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDIQLGGDIREIGSAGCVY-VNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDY 184          
BLAST of FC920269 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 41/127 (32.28%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  268 PLYGRSLQYCSDACLKRYLEARNWNVDKAKKMLEETLKWRSTY--------RPEEIRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWVIDF 624
            PL      + +  C  RYL A  W +      +  TL WR  +          ++I  + +AVE E+GK    G+ +   R +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A +IDF
Sbjct:   76 PLEEEEKAWLTRECFLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY-ENDARPILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDF 201          
BLAST of FC920269 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 44/121 (36.36%), Postives = 65/121 (53.72%), Query Frame = 1
Query:  292 YCSDACLKRYLEARNWNVDKAKKMLEETLKWRS----TYRPEE---IRWNEIAVEGETGKLFRAGFHDRHGRTVLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWVIDFTGW 633
            + S  C  RYL A  WN   A K L +TL WR     T+  E+   +  +++AVE ETGK    GF D   R +  ++ G QNT S   Q++ LVY++E A    P+G E++  ++DF  +
Sbjct:   89 WLSRECFLRYLRANKWNTANAIKGLTKTLVWRREIGLTHGKEDKDPLTADKVAVENETGKQVILGF-DNAKRPLYYMKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSY 208          
The following BLAST results are available for this feature:
BLAST of FC920269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJX4_SCHPO2.712e-1441.51CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
RSC5_DICDI8.723e-1330.83Random slug protein 5 OS=Dictyostelium discoideum ... [more]
PDR16_YEAST4.329e-1232.28Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
PDR17_YEAST5.654e-1236.36Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
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Properties
Property NameValue
Genbank descriptionC32006B04EF RVDevelop1 Citrus clementina cDNA clone C32006B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920269 ID=FC920269; Name=FC920269; organism=Citrus clementina; type=EST; length=687bp
TCAGAGTAATTTCTTTTTCTTTTTCCTTTTACTCCCACTCATTTTTTTCC
TTTTTAGTAAATTTTGTATTCGTTTCGTCAACTCCATCTTCTTCAAAATC
AGATTCATAGACAAAGCATTACCACGGTGTTTCTATCTCCTTCCCCAGGT
TGACTCGATTGCTAAATTGTGGGATCAGTTGCCATGTTTCGCAAGAAGAA
TAACACTCAGGAGAGTGAGGAGCACCATCATGAGTCAAAGGTCAAGGAGC
TTAAGGCTGCGATCGGACCACTTTATGGACGTAGTTTGCAGTATTGCTCT
GATGCATGCTTGAAGAGATATCTGGAGGCTCGAAACTGGAATGTGGACAA
AGCAAAGAAAATGTTGGAAGAGACACTCAAATGGAGGTCAACCTACAGGC
CGGAGGAAATCCGTTGGAATGAAATTGCAGTTGAAGGTGAGACCGGAAAG
TTATTTAGAGCTGGTTTTCATGACCGACATGGCAGGACTGTTCTCATATT
GAGACCCGGAATGCAGAACACTGCATCAATAGACAATCAGATGAGACACC
TAGTCTATCTCATAGAGAATGCTATCCTAAACCTTCCAGAGGGTCAGGAA
CAAATGGCATGGGTTATAGACTTCACTGGGTGGTCATTGAGCACAGCGTC
CCTATCAGTCTGCTCGAGAACTATCATATATTACAAA
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