FC920278

Overview
NameFC920278
Unique NameFC920278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920278_ssr20 microsatellite FC920278_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14203 contig Ccv1_Contig14203:66..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.474e-87
Identity = 151/222 (68.02%), Postives = 169/222 (76.13%), Query Frame = 2
Query:   35 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKRVK 700
            MAKSPETE P KA GWAARD +GT SPFHFSRRE G DDV++KIL+CG+CHSDLH  +N+WG T YP+VPGHEIVG VTKVG NV KF+ GD VGVGV+V SCQ CE+C Q LE YCP  + TYNS    GT+TYGGYSD +VV Q YV++FPDN+PLDAGAPLLCAGITVYSPMKYYGMTEP                   GKAFGLKVTVISTSP K  +
Sbjct:    1 MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNS-PYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETE 221          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 2.941e-86
Identity = 147/219 (67.12%), Postives = 167/219 (76.26%), Query Frame = 2
Query:   35 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            MAKSPETE P K  GW ARD +G  SPFHFSRR+ G +DVT+KILFCG+CH+DLH  +N+WG + YP+VPGHEIVG  TKVG NV+KFKEGD+VGVGV+  SCQ CESC Q LENYCP M  TYN+I  DGTK YGGYS+ IVVDQ +VLRFP+N+P D+GAPLLCAGITVYSPMKYYGMTE                   IGKAFGLKVTVIS+S  K
Sbjct:    1 MAKSPETEHPNKVFGWGARDKSGVLSPFHFSRRDNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTK 219          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.082e-80
Identity = 139/208 (66.83%), Postives = 162/208 (77.88%), Query Frame = 2
Query:   68 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            KA GWAA+D +G  SPFHF+RR+  ADDVT+KIL+CG+CHSDLH  +N+WG T YP+VPGHEI G VTKVG+NV+KFKEGD+VGVGV+V SCQ+CE CQQ LE+YCP  + TYNS    GT+T GGYSD +VV Q +VL+FPDN+PLDAGAPLLCAGITVYSPMKYYGMTEP                   GKAFGLKVTVIS+SP K
Sbjct:    5 KAFGWAAKDASGHLSPFHFTRRQNEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCQECECCQQDLESYCPKPVFTYNS-PYKGTRTQGGYSDFVVVHQRFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISSSPNK 211          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.257e-78
Identity = 135/220 (61.36%), Postives = 163/220 (74.09%), Query Frame = 2
Query:   35 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            MAKSPETE P KA+GWAA DN+GTFSPF+FSRR TG  DV  ++L+CG+CHSDLH  +NEWGVT+YPIVPGHEIVG VT+VG+ V K K GDKVGVGVLV SC++C+ C   LENYC   ILTY +   DGT   GGYSD++V D+H+++R+P+N PLDAGAPLLCAGIT YSP+KY+G+ +P                    KAFG KVTVISTS  K+
Sbjct:    1 MAKSPETEHPVKALGWAATDNSGTFSPFNFSRRATGERDVQFRVLYCGVCHSDLHMVKNEWGVTHYPIVPGHEIVGIVTEVGSKVEKVKIGDKVGVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVKFAKAFGTKVTVISTSLSKK 220          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.463e-77
Identity = 134/209 (64.11%), Postives = 155/209 (74.16%), Query Frame = 2
Query:   68 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            +A GWAA D +G  SPFHFSRRE G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS   DGT+  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPMKYYGMT E                   IGKAFGL+VTVIS S +K
Sbjct:    6 RAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK 214          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.559e-77
Identity = 133/217 (61.29%), Postives = 156/217 (71.89%), Query Frame = 2
Query:   44 SPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            +PE   PQKA GWAARD +GT SP  FSRR TG  DVT K+L+CGICHSDLH  +NEWG   YP +PGHEIVG VT+VGN V  FK GDKVGVG +V SC+ CESC+  LENYCP MILTY S   DGT TYGGYSD++VV++H+ +R PDNM LDA APLLCAG+TVYSP+K++ + +P                   GKAFG KVTVISTSP K+
Sbjct:    5 APENVHPQKAFGWAARDTSGTLSPLKFSRRATGEQDVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVKFGKAFGAKVTVISTSPNKK 221          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.618e-76
Identity = 135/210 (64.29%), Postives = 155/210 (73.81%), Query Frame = 2
Query:   68 KAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGT-KTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMT-EPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            KA GWAA D +G  SPFHFSRRE G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TKVG NV+KFKEGD+VGVGV++ SCQ CESC Q LENYCP ++ TYNS   DGT +  GGYSD+IVVD  +VL  PD +P D+GAPLLCAGITVYSPMKYYGMT E                   IGKAFGL+VTVIS S +K
Sbjct:    6 KAFGWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK 215          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 8.876e-75
Identity = 126/214 (58.88%), Postives = 156/214 (72.90%), Query Frame = 2
Query:   50 ETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKK 691
            E E  +KA GWAARD++G  SPF+F RRETG  DVT K+L+CGICHSDLH  +NEWG + YP+VPGHEIVG VT+VG+ V KFK GD+VGVG +V SC+ CE+C   LENYCP  ILTY +   DG+ TYGGYSD++V D+H+++R PDN+PLD  APLLCAGIT YSP++Y+G+ +P                    KA G+KVTVISTSPKK
Sbjct:    4 EQEHRKKASGWAARDSSGVLSPFNFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPKK 217          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.405e-74
Identity = 128/219 (58.45%), Postives = 158/219 (72.15%), Query Frame = 2
Query:   38 AKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            A S    + Q+A+G AARD++G  SPF  SRR TG DDV IKILFCGICHSDLHC +NEW  + YP+VPGHEI G VT+VG NV++FK GD+VGVG +V SC+ CESC  G EN+CP  + TYNS+D+DGT TYGGYS ++VV + +V+ FP+ MPLD GAPLLCAGITVY+PMKY+G+  P                    +AFGLKVTVIS+SP K+
Sbjct:    5 AASAAAGEEQQAVGLAARDSSGHLSPFAISRRSTGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTEVGKNVTRFKAGDRVGVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVISSSPGKK 223          
BLAST of FC920278 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.085e-72
Identity = 129/220 (58.64%), Postives = 151/220 (68.64%), Query Frame = 2
Query:   35 MAKSPETEQPQKAIGWAARDNTGTFSPFHFSRRETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKVGNNVSKFKEGDKVGVGVLVASCQKCESCQQGLENYCPNMILTYNSIDRDGTKTYGGYSDLIVVDQHYVLRFPDNMPLDAGAPLLCAGITVYSPMKYYGMTEPXXXXXXXXXXXXXXXXXXIGKAFGLKVTVISTSPKKR 694
            MAKS E E P KA GWAARD TG  SPF FSRR TG  DV +K+LFCG+CHSD H   N WG T YPIVPGHEIVG VT+VG+ V K K GD VG+G LV SC+ CESC    E++C N I TY SI  DGT T+GGYSD +V D+H++LR+P N+PLD+GAPLLCAGIT YSP+KYYG+ +P                  + KAFG +VTVI  S  KR
Sbjct:    1 MAKSSEIEHPVKAFGWAARDTTGLLSPFKFSRRATGEKDVRLKVLFCGVCHSDHHMIHNNWGFTTYPIVPGHEIVGVVTEVGSKVEKVKVGDNVGIGCLVGSCRSCESCCDNRESHCENTIDTYGSIYFDGTMTHGGYSDTMVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVIDISESKR 220          
The following BLAST results are available for this feature:
BLAST of FC920278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MTDH_MEDSA3.474e-8768.02Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH9_ARATH2.941e-8667.12Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
MTDH1_STYHU1.082e-8066.83Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
GEDH1_OCIBA2.257e-7861.36Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
CADH3_ARATH1.463e-7764.11Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
MTDH_MESCR5.559e-7761.29Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH2_ARATH1.618e-7664.29Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_FRAAN8.876e-7558.88Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH3_ORYSJ4.405e-7458.45Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH_APIGR1.085e-7258.64Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006C02EF RVDevelop1 Citrus clementina cDNA clone C32006C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920278 ID=FC920278; Name=FC920278; organism=Citrus clementina; type=EST; length=731bp
GGAGTGAAGGATAAAGGCCAGAGAGAGAGAAAGCATGGCAAAATCACCAG
AAACAGAGCAGCCTCAAAAGGCCATTGGTTGGGCTGCCAGAGACAACACT
GGAACCTTCTCCCCATTCCATTTCTCCAGAAGAGAAACTGGTGCTGATGA
TGTAACTATTAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATT
GTGCCAGAAATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCAT
GAAATTGTTGGTACTGTGACAAAAGTTGGAAATAACGTGTCAAAATTCAA
AGAGGGTGACAAGGTTGGAGTTGGGGTCTTGGTAGCCTCCTGCCAAAAAT
GTGAAAGCTGTCAGCAGGGCTTGGAGAATTACTGTCCTAATATGATACTT
ACATATAACTCCATTGATCGTGATGGAACAAAAACTTATGGTGGTTACTC
AGATCTGATTGTTGTTGATCAGCATTATGTGCTCCGCTTTCCTGACAACA
TGCCTCTTGATGCGGGTGCACCACTTTTGTGTGCGGGGATCACAGTGTAC
AGCCCAATGAAATATTATGGAATGACTGAGCCAGGCAAGCATTTGGGTGT
AGCAGGACTTGGTGGGCTTGGCCATGTTGCTGTGAAAATTGGCAAGGCCT
TTGGGTTGAAAGTCACCGTCATCAGTACTTCTCCGAAAAAGAGAGTGAAG
CGATCAGCAAACTGGTGCTGATGCATTCCTT
back to top