FC920282
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.426e-14 Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 1 Query: 121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 387 ++IL SVGA+ADD++IE LLS+VKGKDITELIASGRE+L D+++GFSLFD Sbjct: 24 KSILASVGADADDDKIELLLSQVKGKDITELIASGRERLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSEEESDEELGFSLFD 112 HSP 2 Score: 34.2686 bits (77), Expect = 2.426e-14 Identity = 15/24 (62.50%), Postives = 20/24 (83.33%), Query Frame = 3 Query: 51 MKVIAAYLPAVLGGNAKPSADDLR 122 MKVIAA+L A+LGGN P+ +DL+ Sbjct: 1 MKVIAAFLLALLGGNTSPTDEDLK 24
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 4.151e-14 Identity = 27/39 (69.23%), Postives = 37/39 (94.87%), Query Frame = 1 Query: 121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237 ++IL SVGAEAD+E++EFLL+E+K KDITE+IA+GRE+L Sbjct: 24 KSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERL 62 HSP 2 Score: 39.6614 bits (91), Expect = 4.151e-14 Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 3 Query: 51 MKVIAAYLPAVLGGNAKPSADDLR 122 MKVIAAYL AVLGGN P+ADD++ Sbjct: 1 MKVIAAYLLAVLGGNTSPTADDVK 24
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA2A_MAIZE (60S acidic ribosomal protein P2A OS=Zea mays GN=RPP2A PE=1 SV=3) HSP 1 Score: 58.5362 bits (140), Expect = 9.112e-14 Identity = 35/87 (40.23%), Postives = 41/87 (47.13%), Query Frame = 1 Query: 127 ILGSVGAEADDERIEFLLSEVKGKDITELIASGREKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLFD 387 IL SVG E D+E++E LLS++ GKDITELIA+GREK DDDMGFSLFD Sbjct: 26 ILESVGCEVDNEKMELLLSQLSGKDITELIAAGREKFASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112 HSP 2 Score: 38.1206 bits (87), Expect = 9.112e-14 Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 3 Query: 51 MKVIAAYLPAVLGGNAKPSADDL 119 MK +AAYL AVL GNA PSADDL Sbjct: 1 MKFVAAYLLAVLAGNASPSADDL 23
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 5.703e-13 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1 Query: 121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237 ++I+G+VGA+ D E IE LL EV GKDI ELIASGREKL Sbjct: 24 KDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKL 62 HSP 2 Score: 38.1206 bits (87), Expect = 5.703e-13 Identity = 17/25 (68.00%), Postives = 22/25 (88.00%), Query Frame = 3 Query: 51 MKVIAAYLPAVLGGNAKPSADDLRE 125 MKV AA+L AVLGGNA PSAD++++ Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKD 25
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 4.568e-12 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237 + ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL Sbjct: 24 KTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62 HSP 2 Score: 32.3426 bits (72), Expect = 4.568e-12 Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 3 Query: 51 MKVIAAYLPAVLGGNAKPSADDLR 122 MKV+AAYL AVL G A P++ D++ Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIK 24
BLAST of FC920282 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2) HSP 1 Score: 58.9214 bits (141), Expect = 5.934e-12 Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 Query: 121 ENILGSVGAEADDERIEFLLSEVKGKDITELIASGREKL 237 ++ILGSVGAE +D +IE LL EVKGKD+ ELIA+GREKL Sbjct: 24 KDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKL 62 HSP 2 Score: 31.5722 bits (70), Expect = 5.934e-12 Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 3 Query: 51 MKVIAAYLPAVLGGNAKPSADDLRE 125 MKV+AA+L AVL G A P+ D+++ Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKD 25 The following BLAST results are available for this feature:
BLAST of FC920282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920282 ID=FC920282; Name=FC920282; organism=Citrus clementina; type=EST; length=596bpback to top |