FC920289

Overview
NameFC920289
Unique NameFC920289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6703 contig Ccv1_Contig6703:31..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ARATH (Phosphoserine aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=At4g35630 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 5.724e-58
Identity = 114/175 (65.14%), Postives = 136/175 (77.71%), Query Frame = 1
Query:  112 KNNLASFTNLKK---INFFNTKRAISVTCSAASAPTQDRTAAQIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            K++  SF +L K   +NF +  + ++V C A++   QD   +    G ++RVFNFAAGPA LPE VLLKAQ++LYNWRGSGMSVMEMSHRGKEF SII+KAESDLR LL IPQEYSVLFLQGGATTQFAA+PLNLC  +D VD++VTGSW DKA KEA+K+C   VI SGKS KY
Sbjct:   23 KSSSQSFLHLSKPNTVNFVSKTKPVAVRCVASTTQVQDGVRSG-SVGSQERVFNFAAGPATLPENVLLKAQADLYNWRGSGMSVMEMSHRGKEFLSIIQKAESDLRQLLEIPQEYSVLFLQGGATTQFAALPLNLCKSDDTVDFVVTGSWGDKAVKEAKKYCKTNVIWSGKSEKY 196          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_SPIOL (Phosphoserine aminotransferase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.940e-54
Identity = 109/175 (62.29%), Postives = 123/175 (70.29%), Query Frame = 1
Query:  103 PLNKNNLASFTNLKKINFFNTKRAISVTCSAASAPTQDRTAAQIQSGQEDRVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            P N       T+   +NF        +TCSA    T   T  +I    E+RVFNFAAGPA LPE VL KAQSEL NWRGSGMSVMEMSHRGKEF SII+KAE+DLR LLNIP +Y+VLFLQGGA+TQF+A+PLNLCTP+  VDYIVTGSW DKA KEA K+     I SGKS  Y
Sbjct:   18 PFNPQQNCQQTHFLPLNFKIRNPISRITCSATPTATAVSTTTKIDQRSEERVFNFAAGPAVLPENVLQKAQSELLNWRGSGMSVMEMSHRGKEFTSIIDKAEADLRTLLNIPSDYTVLFLQGGASTQFSAIPLNLCTPDSAVDYIVTGSWGDKAAKEAAKYAAVSSIWSGKSDNY 192          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_ACIAD (Phosphoserine aminotransferase OS=Acinetobacter sp. (strain ADP1) GN=serC PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.043e-36
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            R +NF AGPA LP  VL KAQ EL +W+G G+S+MEMSHR K++ ++ EKAE+DLR L+NIP+ Y VLFLQGGA+ QF+A+P+NL   N   DYI TG WS+KA KEAQ++ +  VI +G S
Sbjct:    2 RAYNFCAGPAALPTAVLEKAQQELLDWQGKGLSIMEMSHRSKDYVAVAEKAEADLRKLMNIPENYQVLFLQGGASLQFSAIPMNLLGKNSKADYIHTGIWSEKALKEAQRYGDINVIEAGTS 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURCJ (Phosphoserine aminotransferase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=serC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.050e-35
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL    +  D++VTGSWS K+F EA+KFC P +  SGK+
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARNTADFVVTGSWSQKSFGEAKKFCTPHLAASGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURM1 (Phosphoserine aminotransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=serC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.372e-35
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + VLFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+C P +  +GK+
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALADLRELLDVPASHRVLFLQGGGIAENAIVPMNLLGSRKTADFVVTGSWSQKSFNEAKKYCTPHLAATGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURVG (Phosphoserine aminotransferase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=serC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.792e-35
Identity = 71/122 (58.20%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA LPE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL++P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+K+C P +  SGK+
Sbjct:    2 RVFNFSAGPAALPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHETALADLRELLDVPASHRILFLQGGGIAENAIVPMNLLGWRKSADFVVTGSWSQKSFNEAKKYCTPHLAASGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURCC (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain MC0-3) GN=serC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.792e-35
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+KFC P +  SGK+
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCTPHLAASGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURCH (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain HI2424) GN=serC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.056e-35
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+KFC P +  SGK+
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCAPHLAASGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_BURCA (Phosphoserine aminotransferase OS=Burkholderia cenocepacia (strain AU 1054) GN=serC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.056e-35
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS 618
            RVFNF+AGPA +PE+VL +A  E+ +W GSGMSVMEMSHRGKEF SI E A +DLR LL +P  + +LFLQGG   + A VP+NL       D++VTGSWS K+F EA+KFC P +  SGK+
Sbjct:    2 RVFNFSAGPAAMPEEVLRQAADEMLDWHGSGMSVMEMSHRGKEFMSIHEAALTDLRDLLGVPASHRILFLQGGGIAENAIVPMNLLGARKTADFVVTGSWSQKSFGEAKKFCAPHLAASGKT 123          
BLAST of FC920289 vs. ExPASy Swiss-Prot
Match: SERC_PSEPK (Phosphoserine aminotransferase OS=Pseudomonas putida (strain KT2440) GN=serC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.161e-34
Identity = 71/125 (56.80%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  253 RVFNFAAGPANLPEKVLLKAQSELYNWRGSGMSVMEMSHRGKEFKSIIEKAESDLRALLNIPQEYSVLFLQGGATTQFAAVPLNLCTPNDPVDYIVTGSWSDKAFKEAQKFCNPQVICSGKS*KY 627
            R FNF AGPA LP+ VL +AQ+E+ +WRG G+SVMEMSHR  ++ +I EKAE DLR LL++P  Y VLFLQGGA+ QFA +PLNL   N   DYI TG WS KA +EA++F N  V  + K   Y
Sbjct:    4 RAFNFCAGPAALPDAVLQRAQAEMLDWRGKGLSVMEMSHRSDDYVAIAEKAEQDLRDLLSVPSNYKVLFLQGGASQQFAEIPLNLLPENGTADYIETGIWSKKAIEEARRFGNVNVAATAKPYDY 128          
The following BLAST results are available for this feature:
BLAST of FC920289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 255
Match NameE-valueIdentityDescription
SERC_ARATH5.724e-5865.14Phosphoserine aminotransferase, chloroplastic OS=A... [more]
SERC_SPIOL2.940e-5462.29Phosphoserine aminotransferase, chloroplastic OS=S... [more]
SERC_ACIAD8.043e-3658.20Phosphoserine aminotransferase OS=Acinetobacter sp... [more]
SERC_BURCJ1.050e-3558.20Phosphoserine aminotransferase OS=Burkholderia cep... [more]
SERC_BURM11.372e-3558.20Phosphoserine aminotransferase OS=Burkholderia mul... [more]
SERC_BURVG1.792e-3558.20Phosphoserine aminotransferase OS=Burkholderia vie... [more]
SERC_BURCC1.792e-3558.20Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_BURCH3.056e-3558.20Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_BURCA3.056e-3558.20Phosphoserine aminotransferase OS=Burkholderia cen... [more]
SERC_PSEPK1.161e-3456.80Phosphoserine aminotransferase OS=Pseudomonas puti... [more]

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Properties
Property NameValue
Genbank descriptionC32006D04EF RVDevelop1 Citrus clementina cDNA clone C32006D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920289 ID=FC920289; Name=FC920289; organism=Citrus clementina; type=EST; length=628bp
GAAATAAAGGCACTTGTCTCTCTTTCAACTAGCAGCTGCTAAGCCATGGC
AACGACGACATCATCACCTCACTCACTGTTTCTCCAGAACCGTAATAGCC
ACCCACTCAATAAAAACAATCTCGCATCTTTCACCAACCTTAAAAAGATC
AATTTTTTTAACACCAAAAGAGCCATTTCAGTCACCTGCTCCGCCGCATC
AGCACCAACCCAAGATCGAACGGCGGCCCAGATCCAATCCGGGCAAGAAG
ACCGGGTCTTCAACTTCGCTGCGGGCCCCGCTAATCTCCCGGAGAAAGTT
CTACTCAAGGCCCAATCGGAGCTTTACAACTGGCGCGGATCTGGCATGAG
CGTGATGGAAATGAGCCATAGAGGTAAAGAATTCAAGTCCATTATTGAAA
AAGCTGAATCGGATCTTAGAGCCCTCTTGAATATTCCCCAAGAATATTCT
GTTTTGTTCTTGCAAGGCGGCGCTACGACACAGTTCGCCGCCGTTCCATT
GAATTTGTGTACACCTAATGACCCGGTCGATTATATCGTCACCGGGTCGT
GGAGTGACAAAGCTTTTAAAGAAGCGCAAAAATTTTGCAACCCACAAGTG
ATTTGCTCTGGCAAAAGCTGAAAGTACA
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