FC920292

Overview
NameFC920292
Unique NameFC920292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14693 contig Ccv1_Contig14693:82..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920292 vs. ExPASy Swiss-Prot
Match: PME1_ARATH (Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.663e-43
Identity = 93/218 (42.66%), Postives = 133/218 (61.01%), Query Frame = 2
Query:   44 METIRSFKGYGKVDELEQQAFRRKTRKRXXXXXXXXXXXXXXXXXXXXXXXXHKNKNDSSSDNMPATQLTPAASLKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQXTCLDALQEL--NVSHYQNSNILKDIR 691
            M+++ SFKGYGKVDE +  A ++KTRKR                        HKNKN+S+    P  +LTP+ SLKA+CSVTR+P             N T DPE LFKLSL+V ++EL  + + P KL ++T+D ++  AL+VC  L +DALD +N+++S++     +K LSS KI+DLKTWLS ++TD  TC D+L EL  N + Y NS I ++++
Sbjct:    1 MDSVNSFKGYGKVDEAQDLALKKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNESTPS--PPPELTPSTSLKAICSVTRFPESCISSISKLPSSNTT-DPETLFKLSLKVIIDELDSISDLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTWLSATVTDHETCFDSLDELKQNKTEYANSTITQNLK 215          
BLAST of FC920292 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.790e-40
Identity = 92/205 (44.88%), Postives = 132/205 (64.39%), Query Frame = 2
Query:   44 METIRSFKGYGKVDELEQQAFRRKTRKRXXXXXXXXXXXXXXXXXXXXXXXXHKNKNDS--SSDNMPATQLTPAASLKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQT-KDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQXTCLDALQELN 649
            M+TI+SFKGYGKV+ELEQQA+ +KTRKR                        H   ++S  SSD++P T+L+PAASLKAVC  TRYP             N T DPE+LFKLSL+VA++E   L ++PSKL+    +D ++ +A+ VC ++F DALD +N+S+S++   +G ++ SS  + +++TWLS ++TDQ TCLDA+ ELN
Sbjct:    1 MDTIKSFKGYGKVNELEQQAYEKKTRKRLIIIAVSSIVLIAVIIAAVAGVVIHNRNSESSPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTT-DPELLFKLSLRVAIDE---LSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAG-RIASSASVSNVETWLSAALTDQDTCLDAVGELN 200          
BLAST of FC920292 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37
Identity = 91/215 (42.33%), Postives = 122/215 (56.74%), Query Frame = 2
Query:   44 METIRSF-KGYGKVDELEQQAFRRKTRKRXXXXXXXXXXXXXXXXXXXXXXXXHKNKNDSSSDNMPAT-QLTPAASLKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQXTCLDALQELNVSHYQNSNILK 682
            M+T++S  KGYGKVDE +  A +RKTRKR                        H  K +S      +  +LTPAASLK VCSVT YP             N T DPE++F+LSLQV ++EL  +   P KL ++T D  +  AL VCE L D A+D VNE++S+M+V  G+K+L++  I DL TWLS ++T   TCLDAL E  +SH  ++  LK
Sbjct:    1 MDTVKSINKGYGKVDETQDLALKRKTRKRLYQIGISVAVLVAIIISSTVTIAIHSRKGNSPHPTPSSVPELTPAASLKTVCSVTNYPVSCFSSISKLPLSNTT-DPEVIFRLSLQVVIDELNSIVELPKKLAEETDDEGLKSALSVCEHLLDLAIDRVNETVSAMEVVDGKKILNAATIDDLLTWLSAAVTYHGTCLDALDE--ISHTNSAIPLK 212          

HSP 2 Score: 135.191 bits (339), Expect = 3.216e-31
Identity = 72/147 (48.98%), Postives = 98/147 (66.67%), Query Frame = 2
Query:  245 QLTPAASLKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSM-QVGSGEKLLSSKKIQDLKTWLSTSITDQXTCLDALQEL--NVSHYQNSNI 676
            +LTPAASL+ VCSVTRYP             N T DPE LF+LSLQV +NEL  +   P KL ++T D ++  +L VC  +F+DA+D VN+++S+M +VG G+K+L S  I +++TWLS ++TD  TCLDAL EL  N + Y NS I
Sbjct:  264 KLTPAASLRNVCSVTRYPASCVSSISKLPSSNTT-DPEALFRLSLQVVINELNSIAGLPKKLAEETDDERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPI 409          

HSP 3 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 57/135 (42.22%), Postives = 81/135 (60.00%), Query Frame = 2
Query:  251 TPAASLKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELGKLQNYPSKLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQ--VGSGEKLLSSKKIQDLKTWLSTSITDQXTCLDALQELN 649
            TP++ L+ VC+VT YP               T DP++LF+LSLQV  +EL  +   P KL ++T D  +  AL VC  +FD A+D VN+++SS+   +  G+K L+S  I DL TWLS+++TD  TC D L E N
Sbjct:  454 TPSSVLRTVCNVTNYPASCISSISKLPLSKTTTDPKVLFRLSLQVTFDELNSIVGLPKKLAEETNDEGLKSALSVCADVFDLAVDSVNDTISSLDEVISGGKKNLNSSTIGDLITWLSSAVTDIGTCGDTLDEDN 588          
The following BLAST results are available for this feature:
BLAST of FC920292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PME1_ARATH3.663e-4342.66Pectinesterase 1 OS=Arabidopsis thaliana GN=PME1 P... [more]
PME3_PHAVU3.790e-4044.88Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME26_ARATH5.122e-3742.33Putative pectinesterase/pectinesterase inhibitor 2... [more]
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Properties
Property NameValue
Genbank descriptionC32006D08EF RVDevelop1 Citrus clementina cDNA clone C32006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920292 ID=FC920292; Name=FC920292; organism=Citrus clementina; type=EST; length=691bp
GAAAACACAGAAACGTACAATAAAGTGATAAACCATATCAAATATGGAAA
CGATCAGATCCTTTAAGGGATATGGCAAAGTCGATGAGCTCGAGCAACAA
GCATTCCGGCGAAAGACACGTAAGCGTGTGATCATCTTAATCATCTCATC
CATAGTCCTTGTGGCCGTGATCATTGGTGCAGTCATTGGAGTCGTCGTGC
ACAAGAACAAAAACGATTCATCTTCCGATAATATGCCTGCAACTCAGCTG
ACCCCAGCGGCTTCACTCAAAGCCGTATGCAGCGTGACTCGGTACCCAGA
TTCTTGCTTCTCCAGCATTTCCTCCATCGACGCATCAAACGTAACCAAGG
ACCCAGAAATCCTCTTCAAGCTCTCTTTACAAGTCGCCATGAATGAGCTT
GGGAAATTACAAAACTATCCCTCGAAGCTGAAGCAGCAAACGAAGGATCC
TCAAGTGATTGAAGCTCTTAAGGTTTGTGAGACGCTCTTTGATGACGCGT
TGGATCATGTCAACGAATCTTTATCCTCAATGCAAGTTGGTAGCGGAGAG
AAGCTTTTATCATCAAAAAAGATTCAAGATTTGAAGACATGGCTGAGCAC
ATCGATCACCGACCAGNACACGTGCTTGGACGCCTTGCAAGAGCTAAACG
TATCGCATTACCAGAACTCAAATATTCTCAAAGATATACGA
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