FC920293

Overview
NameFC920293
Unique NameFC920293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14024 contig Ccv1_Contig14024:206..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.059e-77
Identity = 139/199 (69.85%), Postives = 157/199 (78.89%), Query Frame = 1
Query:  115 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVRVAYTSVRHI*QMNIRKTWT 711
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHLSS TT FPTSW+FS  Q  +   A     +       KTW+
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQFSNNQPCIGNTARQCSAYTANAASEKTWS 199          
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.542e-76
Identity = 138/199 (69.35%), Postives = 156/199 (78.39%), Query Frame = 1
Query:  115 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVRVAYTSVRHI*QMNIRKTWT 711
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHL+S T+ FPTSW+FS  Q  +   A             KTWT
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQFSNTQPCIGNTARQCSAFTANPTSEKTWT 199          
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.313e-69
Identity = 132/200 (66.00%), Postives = 149/200 (74.50%), Query Frame = 1
Query:  115 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSW-EFSGGQHVLVRVAYTSVRHI*QMNIRKTWT 711
            MGDFN                 +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIPFAMFYYEGDQDKSVGKR+ SAL+WV ++A+VC L+LGILYGLVGKVDFTVRHLSS    FP S+  FS GQ  +         +    N + TWT
Sbjct:    1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGKVDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWT 200          
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  181 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSALIWVIMTAIVCALVLGILYGLVG 561
            ++YL+  +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+         G      PM  LW+ +YI+ AV    + PFAMF+YE ++ D + G +I  A           A +  +LY   G
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICPFAMFFYESEEADPAAGSQIAGAFKGTFAILFAFAALTIVLYVFFG 138          
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19
Identity = 59/164 (35.98%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  181 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVRVA 660
            ++YL+  +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN         +G      PM  LW+ +YI  AV    + PFAMF+YE ++ D   G +I  A      ++       +VL + +G V ++   V        N+P   + S   + L  +A
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICPFAMFFYESEEADPGAGSQIAGAFKGTFAILFAFTALTIVLYVFFG-VAEIPTIVVLGRFQVLNYPFMSDISNITYALPEIA 173          
The following BLAST results are available for this feature:
BLAST of FC920293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LMBD2_ARATH4.059e-7769.85LIMR family protein At5g01460 OS=Arabidopsis thali... [more]
LMBD1_ARATH1.542e-7669.35LIMR family protein At3g08930 OS=Arabidopsis thali... [more]
LMBD1_ORYSJ5.313e-6966.00LIMR family protein Os06g0128200 OS=Oryza sativa s... [more]
Y3610_DICDI2.264e-1940.63LIMR family protein DDB_G0293610 OS=Dictyostelium ... [more]
Y3707_DICDI5.043e-1935.98LIMR family protein DDB_G0283707 OS=Dictyostelium ... [more]
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Properties
Property NameValue
Genbank descriptionC32006D09EF RVDevelop1 Citrus clementina cDNA clone C32006D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920293 ID=FC920293; Name=FC920293; organism=Citrus clementina; type=EST; length=713bp
AGCTCTCAATTTCAAAAAACAAAAAAAAAGGACCAGATCTACACAAAATT
TGCTGAAACCCTAATTCGTGCGATCCGTCGTTTTGATCGGAATCGAGAGA
GAGGTTAAAACAAAATGGGTGATTTTAACCTCGCTCTGGTGATCGTCGCG
ATAGTGGTGTGCGTTTTGGTATTCATTTTCAATGTCTATCTTCTCGTTAA
CTACCAGCATCCCGACGACGCCAACCAGGCGTATTTTCCGAAATTCGTCG
TCGTTTTGGGGCTTTCCGTTGCCGCTATTTCAATTCTTATGTTGCCGGCT
GACGTGGCCAATCGGCAGGCGTGTAGGCACGCGATTTATAATGGCGCCTG
TAATCTCACCTTGCCGATGAAGGATCTTTGGCTTGCTGTCTATATTCTCG
ATGCGGTGCTTGTTTTCTTCGTTATTCCGTTCGCAATGTTCTATTACGAA
GGCGACCAGGATAAGAGTGTGGGCAAAAGGATTAAGAGCGCTTTAATTTG
GGTGATTATGACGGCTATTGTCTGTGCCCTTGTGCTTGGCATTTTGTATG
GTCTAGTTGGGAAGGTTGACTTCACTGTTAGACACCTCTCTTCAACTACT
ACTAATTTTCCGACTTCTTGGGAGTTCTCTGGTGGTCAACATGTGTTGGT
GCGAGTGGCGTACACCAGTGTTCGGCATATTTAGCAAATGAACATCAGAA
AAACATGGACGAT
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