FC920293
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1) HSP 1 Score: 287.73 bits (735), Expect = 4.059e-77 Identity = 139/199 (69.85%), Postives = 157/199 (78.89%), Query Frame = 1 Query: 115 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVRVAYTSVRHI*QMNIRKTWT 711 MGDFN ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHLSS TT FPTSW+FS Q + A + KTW+ Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQFSNNQPCIGNTARQCSAYTANAASEKTWS 199
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2) HSP 1 Score: 285.804 bits (730), Expect = 1.542e-76 Identity = 138/199 (69.35%), Postives = 156/199 (78.39%), Query Frame = 1 Query: 115 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVRVAYTSVRHI*QMNIRKTWT 711 MGDFN ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHL+S T+ FPTSW+FS Q + A KTWT Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQFSNTQPCIGNTARQCSAFTANPTSEKTWT 199
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 5.313e-69 Identity = 132/200 (66.00%), Postives = 149/200 (74.50%), Query Frame = 1 Query: 115 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSW-EFSGGQHVLVRVAYTSVRHI*QMNIRKTWT 711 MGDFN +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIPFAMFYYEGDQDKSVGKR+ SAL+WV ++A+VC L+LGILYGLVGKVDFTVRHLSS FP S+ FS GQ + + N + TWT Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGKVDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWT 200
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19 Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1 Query: 181 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSALIWVIMTAIVCALVLGILYGLVG 561 ++YL+ +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+ G PM LW+ +YI+ AV + PFAMF+YE ++ D + G +I A A + +LY G Sbjct: 21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICPFAMFFYESEEADPAAGSQIAGAFKGTFAILFAFAALTIVLYVFFG 138
BLAST of FC920293 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.043e-19 Identity = 59/164 (35.98%), Postives = 86/164 (52.44%), Query Frame = 1 Query: 181 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFSGGQHVLVRVA 660 ++YL+ +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN +G PM LW+ +YI AV + PFAMF+YE ++ D G +I A ++ +VL + +G V ++ V N+P + S + L +A Sbjct: 21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICPFAMFFYESEEADPGAGSQIAGAFKGTFAILFAFTALTIVLYVFFG-VAEIPTIVVLGRFQVLNYPFMSDISNITYALPEIA 173 The following BLAST results are available for this feature:
BLAST of FC920293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920293 ID=FC920293; Name=FC920293; organism=Citrus clementina; type=EST; length=713bpback to top |