FC920295

Overview
NameFC920295
Unique NameFC920295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14113 contig Ccv1_Contig14113:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_CAEEL (Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis elegans GN=dpyd-1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 73/162 (45.06%), Postives = 99/162 (61.11%), Query Frame = 1
Query:  238 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS++  E  L+  ++LK  +P KI+IASIM  YNKA W EL  + EE G D +E+N SCPHGM E  MG A G
Sbjct:  544 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVIASIMCVYNKADWIELATKSEEAGADILELNLSCPHGMGEKGMGLACG 699          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_DANRE (Dihydropyrimidine dehydrogenase [NADP+] OS=Danio rerio GN=dpyd PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.420e-29
Identity = 69/160 (43.12%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            D+S+ + G++ PNPF + S PP T+  +++RAF++GWG  + KT  LD   V NV+PR  R      G+  G I G     + NIELIS++      K   +LKA +P  I+IASIM  YN+A W EL    +E+  D +E+N SCPHGM E  MG A G
Sbjct:  532 DISVEMCGIKFPNPFGLASAPPTTSAAMIRRAFEQGWGFALTKTFGLDKDLVTNVSPRIVR------GTTSGHIFGPGQGSFLNIELISEKTAAYWCKSVAELKADFPKNIIIASIMCSYNQADWTELAKMAQESQADALELNLSCPHGMGERGMGLACG 685          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_MOUSE (Dihydropyrimidine dehydrogenase [NADP+] OS=Mus musculus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.423e-29
Identity = 71/160 (44.38%), Postives = 94/160 (58.75%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++          +LKA +PD ILIASIM  YNK+ W EL    E +G D +E+N SCPHGM E  MG A G
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSYNKSDWMELSKMAEASGADALELNLSCPHGMGERGMGLACG 685          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_CAEBR (Probable dihydropyrimidine dehydrogenase [NADP+] OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 70/162 (43.21%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  238 EPDLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            E D+S+ + G++  NPF + S PP T+  + +RAF++GWG ++ KT  LD   V NV+PR  R      GS  G + G     + NIELIS++  E  L+  ++LK  +P KI++ASIM  YNK  W EL  + E  G D +E+N SCPHGM E  MG A G
Sbjct:  554 EVDISVDMCGVKFENPFGLASAPPTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVR------GSTSGPLYGPNQGSFMNIELISEKSCEYWLQCIRELKRDHPTKIVVASIMCVYNKEDWIELATKSEAAGADILELNLSCPHGMGEKGMGLACG 709          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_RAT (Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus norvegicus GN=Dpyd PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.398e-29
Identity = 71/160 (44.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            D+S+ + GL+ PNPF + S  P T+  +++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++          +LKA +PD ILIASIM  YNK  W EL    E +G D +E+N SCPHGM E  MG A G
Sbjct:  532 DISVEMAGLRFPNPFGLASATPATSTPMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKADFPDNILIASIMCSYNKNDWMELSKMAEASGADALELNLSCPHGMGERGMGLACG 685          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_DICDI (Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyostelium discoideum GN=pyd1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            D+S+ + G++ PNPF + S  P T+  +++R+F++GWG  V KT SLD   V NV+PR  R     +    GQ   + NIELIS++      K   +LK  +PD+I+IASIM  +NK  W +L    E +G D IE+N SCPHGM E  MG A G
Sbjct:  530 DISVEMCGMKFPNPFGLASATPATSAAMIRRSFEQGWGFAVTKTFSLDKDLVTNVSPRIVRGTTSGHHFGPGQG-AFLNIELISEKTCHYWCKAIGELKRDFPDRIVIASIMCGFNKEDWTQLAKMAEASGADGIELNLSCPHGMGEKGMGLACG 683          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_PONAB (Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo abelii GN=DPYD PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E++G D +E+N SCPHGM E  MG A G
Sbjct:  532 DISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACG 685          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_HUMAN (Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sapiens GN=DPYD PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E++G D +E+N SCPHGM E  MG A G
Sbjct:  532 DISVEMAGLKFINPFGLASATPATSTSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIIR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWTELAKKSEDSGADALELNLSCPHGMGERGMGLACG 685          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: DPYD_PIG (Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scrofa GN=DPYD PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 69/160 (43.12%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIG-----WENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            D+S+ + GL+  NPF + S  P T+ ++++RAF+ GWG  + KT SLD   V NV+PR  R      G+  G + G     + NIELIS++      +   +LKA +PD I+IASIM  YNK  W EL  + E +G D +E+N SCPHGM E  MG A G
Sbjct:  532 DISVEMAGLKFINPFGLASAAPTTSSSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVR------GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACG 685          
BLAST of FC920295 vs. ExPASy Swiss-Prot
Match: YEIA_ECOLI (Uncharacterized protein yeiA OS=Escherichia coli (strain K12) GN=yeiA PE=3 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 72/155 (46.45%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  244 DLSITVNGLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVVAKTVSLDAAKVINVTPRYARLRAGANGSAKGQIIGWENIELISDRPLETMLKEFKQLKALYPDKILIASIMEEYNKAAWEELIDRVEETGIDXIEVNFSCPHGMPET*MGAAVG 708
            DLSIT  G++ PNPF + S P G  Y +  +A+D GWG VV KT+    A    V+PR+  L     G      IG++N+E I++ PLE  L   ++LK  YPDK+LIASIM E N+  WEEL   V+E G D IE NFSCP  M    MG+ VG
Sbjct:    5 DLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGVVFKTIGFFIAN--EVSPRFDHLVKEDTG-----FIGFKNMEQIAEHPLEENLAALRRLKEDYPDKVLIASIMGE-NEQQWEELARLVQEAGADMIECNFSCPQ-MTSHAMGSDVG 150          
The following BLAST results are available for this feature:
BLAST of FC920295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DPYD_CAEEL1.285e-3045.06Dihydropyrimidine dehydrogenase [NADP+] OS=Caenorh... [more]
DPYD_DANRE1.420e-2943.13Dihydropyrimidine dehydrogenase [NADP+] OS=Danio r... [more]
DPYD_MOUSE2.423e-2944.38Dihydropyrimidine dehydrogenase [NADP+] OS=Mus mus... [more]
DPYD_CAEBR3.164e-2943.21Probable dihydropyrimidine dehydrogenase [NADP+] O... [more]
DPYD_RAT5.398e-2944.38Dihydropyrimidine dehydrogenase [NADP+] OS=Rattus ... [more]
DPYD_DICDI7.050e-2943.23Dihydropyrimidine dehydrogenase [NADP+] OS=Dictyos... [more]
DPYD_PONAB1.202e-2843.13Dihydropyrimidine dehydrogenase [NADP+] OS=Pongo a... [more]
DPYD_HUMAN1.570e-2843.13Dihydropyrimidine dehydrogenase [NADP+] OS=Homo sa... [more]
DPYD_PIG5.968e-2843.13Dihydropyrimidine dehydrogenase [NADP+] OS=Sus scr... [more]
YEIA_ECOLI2.962e-2746.45Uncharacterized protein yeiA OS=Escherichia coli (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006D11EF RVDevelop1 Citrus clementina cDNA clone C32006D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920295 ID=FC920295; Name=FC920295; organism=Citrus clementina; type=EST; length=710bp
GATCGTAAATTATTATTAAGTCGAATTCATAAAGCTTCTCTCTGATCCCA
AAAGAATCTTTAGAACTGAGTGAGATTCAATCTTGTTCATTTCCTTTTAT
CTCCATCCATGGCATCATTGAATTTGAATCAGATCATAAGCAACAGCAAC
ACCTCCTTTGCTGTGAATCGTCGGCCAGGATTGCGCTTGCCTAGTCGAAT
TGGGTTGAGGGTTTTGGCTTCTGATTCAGCTTCAGCAGAGCCAGACTTGA
GTATTACAGTAAATGGACTGCAGATGCCGAACCCGTTTGTTATCGGATCG
GGTCCACCTGGCACCAACTACACTGTCATGAAGCGAGCCTTTGATGAAGG
CTGGGGTGCTGTTGTTGCTAAAACTGTATCATTAGATGCAGCAAAAGTTA
TAAACGTAACTCCTCGATATGCCCGCCTGCGAGCAGGTGCGAATGGATCA
GCCAAAGGGCAAATTATTGGGTGGGAGAACATAGAACTCATTAGCGATCG
GCCGCTTGAAACAATGTTGAAAGAATTTAAACAATTAAAAGCATTGTATC
CGGATAAGATTCTCATCGCTTCAATTATGGAAGAGTATAACAAAGCTGCA
TGGGAGGAGCTTATTGATCGAGTGGAAGAAACAGGAATTGATGNCATAGA
AGTTAATTTTTCATGTCCACATGGCATGCCGGAAACGTAAATGGGGGCTG
CTGTTGGCCA
back to top