FC920298

Overview
NameFC920298
Unique NameFC920298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14114 contig Ccv1_Contig14114:1..389. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC_SPIOL (Fructose-bisphosphate aldolase, chloroplastic OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 7.963e-29
Identity = 66/83 (79.52%), Postives = 70/83 (84.34%), Query Frame = 3
Query:  144 PVLDKSEWVKGQAIR-QSTVSVRSLPSGPSFLTIRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            PVLD  E++KGQ +R  S   VR  PSG S LT+RA SYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR
Sbjct:   11 PVLDNPEFLKGQTLRIPSVAGVRFTPSGSSSLTVRASSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 93          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC2_ARATH (Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.240e-26
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 3
Query:  144 PVLDKSEWVKGQAI--RQSTVSVRSLPSGPSFLTIRAGS-YADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            PVLDKSEWVKGQ++  RQ + +   L +  + LT+RA S YADELVKTAKT+ASPGRGILAMDESNATCGKRL SIGLENTEANR
Sbjct:   11 PVLDKSEWVKGQSVLFRQPSSASVVLRNRATSLTVRAASSYADELVKTAKTIASPGRGILAMDESNATCGKRLDSIGLENTEANR 95          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC1_ARATH (Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.905e-24
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  156 KSEWVKGQAI---RQSTVSVRSLPSGPSFLTIRAGS-YADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            KS+WVKGQ++   + S+VS       PS LT+RA S YADELVKTAKT+ASPG GI+AMDESNATCGKRLASIGLENTEANR
Sbjct:   15 KSDWVKGQSLLLRQPSSVSAIRSHVAPSALTVRAASAYADELVKTAKTIASPGHGIMAMDESNATCGKRLASIGLENTEANR 96          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC1_PEA (Fructose-bisphosphate aldolase 1, chloroplastic (Fragment) OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.608e-21
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  234 LTIRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            LTIRAGSYADELVKTAKT+ASPGRGILAMDESNATCGKRLASIGLENTE NR
Sbjct:    2 LTIRAGSYADELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEVNR 53          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC_ORYSJ (Fructose-bisphosphate aldolase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0171300 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  156 KSEW-VKGQAIRQSTVSVRSLPSGPSFLTIRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            KSEW    QA     V+V         + +RAG+Y DELVKTAKT+ASPGRGILAMDESNATCGKRLASIGLENTEANR
Sbjct:   15 KSEWGATRQAAAPKPVTVS--------MVVRAGAYDDELVKTAKTIASPGRGILAMDESNATCGKRLASIGLENTEANR 85          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC3_ARATH (Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.966e-19
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 3
Query:  159 SEWVKGQAIRQSTVSVRSLPSGPSFLTIRAGSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            S W+ GQ     T +  S P   SF  IRAG+Y+DELVKTAK++ASPGRGILA+DESNATCGKRLASIGL+NTE NR
Sbjct:   14 SPWI-GQRSFAHTSASSSPPPRVSF-AIRAGAYSDELVKTAKSIASPGRGILAIDESNATCGKRLASIGLDNTEDNR 88          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC2_PEA (Fructose-bisphosphate aldolase 2, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.756e-19
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 3
Query:  249 GSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            GSYADELVKTAKT+ASPGRGILAMDESNATCGKRL SIGLENTEANR
Sbjct:    1 GSYADELVKTAKTIASPGRGILAMDESNATCGKRLDSIGLENTEANR 47          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALFC_CHLRE (Fructose-bisphosphate aldolase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALDCHL PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.904e-14
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 3
Query:  249 GSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            G Y +EL+KTA TVAS GRGILAMDESNATCGKRL SIG+ENTE NR
Sbjct:   28 GKYDEELIKTAGTVASKGRGILAMDESNATCGKRLDSIGVENTEENR 74          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALF1_PEA (Fructose-bisphosphate aldolase, cytoplasmic isozyme 1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.185e-12
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 3
Query:  249 GSYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            G YADEL+K AK +A+PG+GILA DES  T GKRLASI +EN EANR
Sbjct:    6 GKYADELIKNAKYIATPGKGILAADESTGTIGKRLASINVENIEANR 52          
BLAST of FC920298 vs. ExPASy Swiss-Prot
Match: ALF_ARATH (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Arabidopsis thaliana GN=At4g26520 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.733e-11
Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 3
Query:  255 YADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANR 389
            Y DEL+KTAK +A+PGRGILA DES  T GKR A I +ENTE+NR
Sbjct:    8 YEDELIKTAKYIATPGRGILAADESTETIGKRFAGINVENTESNR 52          
The following BLAST results are available for this feature:
BLAST of FC920298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ALFC_SPIOL7.963e-2979.52Fructose-bisphosphate aldolase, chloroplastic OS=S... [more]
ALFC2_ARATH8.240e-2674.12Probable fructose-bisphosphate aldolase 2, chlorop... [more]
ALFC1_ARATH5.905e-2471.95Probable fructose-bisphosphate aldolase 1, chlorop... [more]
ALFC1_PEA1.608e-2196.15Fructose-bisphosphate aldolase 1, chloroplastic (F... [more]
ALFC_ORYSJ1.778e-2068.35Fructose-bisphosphate aldolase, chloroplastic OS=O... [more]
ALFC3_ARATH1.966e-1967.53Probable fructose-bisphosphate aldolase 3, chlorop... [more]
ALFC2_PEA9.756e-1995.74Fructose-bisphosphate aldolase 2, chloroplastic OS... [more]
ALFC_CHLRE1.904e-1480.85Fructose-bisphosphate aldolase 1, chloroplastic OS... [more]
ALF1_PEA5.185e-1270.21Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
ALF_ARATH5.733e-1168.89Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
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Properties
Property NameValue
Genbank descriptionC32006E02EF RVDevelop1 Citrus clementina cDNA clone C32006E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920298 ID=FC920298; Name=FC920298; organism=Citrus clementina; type=EST; length=389bp
CGGGGAAAAGAGGCAGAAGAAAGATAGTGAAGATAAGATTATAAGTGCTA
TAAGCTAAGGCCTCTCGAGCTCAGAACCCACAGCAAGAAGAAGCAAAGAG
GAAAATGGCCTCAGCCTCGGCATCTTTACTCAAGTCATCATCCCCCGTTC
TTGACAAGTCTGAGTGGGTTAAGGGCCAGGCCATCCGCCAGTCTACTGTC
TCAGTCCGCAGCCTCCCCAGTGGCCCCTCCTTCCTCACCATCCGTGCTGG
TTCCTATGCCGATGAGCTTGTCAAGACCGCGAAAACTGTTGCATCACCAG
GACGTGGAATTTTGGCCATGGATGAGTCAAATGCAACTTGTGGAAAACGC
CTTGCCTCAATTGGGTTAGAGAACACTGAGGCTAACCGC
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