FC920299

Overview
NameFC920299
Unique NameFC920299
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14115 contig Ccv1_Contig14115:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILS+NGV
Sbjct:   48 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV 121          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILS+NGV
Sbjct:   48 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV 121          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.006e-37
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGV
Sbjct:   49 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV 122          

HSP 2 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 3
Query:   54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200
            MATS IQ SAFAGQT L+  NE VRKVG  +GGR++MRRT+KS P+SIW
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIW 48          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.926e-37
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILS+NGV
Sbjct:   50 YGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGV 123          

HSP 2 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 3
Query:   54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200
            MATSAIQ SAFAGQTAL+QSNE V K+G   GGR++MRRTVKS P SIW
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIW 49          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGVS 670
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV+
Sbjct:   50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 124          

HSP 2 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 3
Query:   54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200
            MATSAIQ SAFAGQTAL+  NE VRK+G   GGR TMRRTVKS PQSIW
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIW 49          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGVS 670
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV+
Sbjct:   22 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 96          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LS+NGV
Sbjct:   49 YGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV 122          

HSP 2 Score: 72.0182 bits (175), Expect = 3.258e-12
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 3
Query:   54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200
            MA SAIQ SAFAGQTAL+Q +E VRKVGV+D GR +MRRTVK+ PQSIW
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSD-GRFSMRRTVKAVPQSIW 48          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.991e-37
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV
Sbjct:   50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123          

HSP 2 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 3
Query:   54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200
            MAT AIQ SAF GQ   +  NEF+RKVG    GRITMRRTVKS PQSIW
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIW 49          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.991e-37
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV
Sbjct:   50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123          

HSP 2 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 3
Query:   54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200
            MATSAI+ SAFAGQTAL+  NE VRK+G  +GGR TMRRTVKS PQSIW
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIW 49          
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 2
Query:  446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667
            YGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L +NGV
Sbjct:   50 YGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGV 123          

HSP 2 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 3
Query:   54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200
            MATSAIQ SAF G+T LRQ NEF+RK G     R TMRRTVKS P+SIW
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIW 49          
The following BLAST results are available for this feature:
BLAST of FC920299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB23_ORYSJ1.552e-3897.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.552e-3897.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SILPR1.006e-3794.59Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI2.926e-3794.59Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP3.822e-3793.33Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC3.822e-3793.33Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB21_LEMGI3.822e-3793.24Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC4.991e-3794.59Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC4.991e-3794.59Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB215_PEA1.112e-3691.89Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionC32006E03EF RVDevelop1 Citrus clementina cDNA clone C32006E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920299 ID=FC920299; Name=FC920299; organism=Citrus clementina; type=EST; length=683bp
GAGTGCGAAAAGAATCTTCAGCAACAAAAAGAAAAGCTTTCGCATAAGAA
CATATGGCAACCTCTGCTATCCAACACTCAGCATTTGCTGGCCAGACCGC
CTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTG
GCCGTATCACCATGAGGAGGACTGTCAAATCCACTCCCCAGAGCATCTGG
TAACTACATTTTACACATTCTTAGTTGCTAAGCTTGCTTGTGTTATTGCT
TCTTTATCAAGCATGGCATGCATGTTTGATTTTGGTTACCGATATGCCAT
TAGTTTTCAGCTTATGTAAAAATAAATAAAGAGATCAGACATAACTTCAA
TTTAAAACAAAAAGCTCTAGGCGCAAGAAAAATTGTAATTCTAGCGTAAG
CAGTCTCAAGTATCTGATCAAAGAAACCTGTAATCGACAAACAGGTACGG
CCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCAT
ACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTA
TCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCA
CAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCC
TCTCCAGAAATGGAGTGAGTTCGGCGAAGCAGT
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