FC920299
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38 Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILS+NGV Sbjct: 48 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV 121
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.552e-38 Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILS+NGV Sbjct: 48 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGV 121
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.006e-37 Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++NGV Sbjct: 49 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV 122 HSP 2 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 3 Query: 54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200 MATS IQ SAFAGQT L+ NE VRKVG +GGR++MRRT+KS P+SIW Sbjct: 1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIW 48
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 155.221 bits (391), Expect = 2.926e-37 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILS+NGV Sbjct: 50 YGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGV 123 HSP 2 Score: 77.0258 bits (188), Expect = 1.013e-13 Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 3 Query: 54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200 MATSAIQ SAFAGQTAL+QSNE V K+G GGR++MRRTVKS P SIW Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIW 49
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37 Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGVS 670 YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV+ Sbjct: 50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 124 HSP 2 Score: 77.411 bits (189), Expect = 7.754e-14 Identity = 38/49 (77.55%), Postives = 40/49 (81.63%), Query Frame = 3 Query: 54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200 MATSAIQ SAFAGQTAL+ NE VRK+G GGR TMRRTVKS PQSIW Sbjct: 1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIW 49
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37 Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGVS 670 YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV+ Sbjct: 22 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 96
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.822e-37 Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LS+NGV Sbjct: 49 YGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGV 122 HSP 2 Score: 72.0182 bits (175), Expect = 3.258e-12 Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 3 Query: 54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200 MA SAIQ SAFAGQTAL+Q +E VRKVGV+D GR +MRRTVK+ PQSIW Sbjct: 1 MAASAIQSSAFAGQTALKQRDELVRKVGVSD-GRFSMRRTVKAVPQSIW 48
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 4.991e-37 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV Sbjct: 50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123 HSP 2 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 3 Query: 54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200 MAT AIQ SAF GQ + NEF+RKVG GRITMRRTVKS PQSIW Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIW 49
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 4.991e-37 Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILS+NGV Sbjct: 50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGV 123 HSP 2 Score: 77.0258 bits (188), Expect = 1.013e-13 Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 3 Query: 54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200 MATSAI+ SAFAGQTAL+ NE VRK+G +GGR TMRRTVKS PQSIW Sbjct: 1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIW 49
BLAST of FC920299 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36 Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 2 Query: 446 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSRNGV 667 YGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L +NGV Sbjct: 50 YGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGV 123 HSP 2 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 3 Query: 54 MATSAIQHSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 200 MATSAIQ SAF G+T LRQ NEF+RK G R TMRRTVKS P+SIW Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIW 49 The following BLAST results are available for this feature:
BLAST of FC920299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920299 ID=FC920299; Name=FC920299; organism=Citrus clementina; type=EST; length=683bpback to top |