FC920311

Overview
NameFC920311
Unique NameFC920311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15157 contig Ccv1_Contig15157:257..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_ARATH (Proline iminopeptidase OS=Arabidopsis thaliana GN=PIP PE=2 SV=3)

HSP 1 Score: 333.569 bits (854), Expect = 5.898e-91
Identity = 160/219 (73.06%), Postives = 181/219 (82.65%), Query Frame = 3
Query:   30 LRFLPSSHQNFTLA--GRKDLVIRAQNFGVKSEPKLIDMMESGKELPELNTN-LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPEN 677
            +RF PS+H N  L   G++ + +     G KSE    D ME  +    +N   LY  +EPYS+G LKVSD+HT+YWEQSG P GHPVVFLHGGPGGGT PSNRRFFDP+FYRI+LFDQRGAGKSTPHACL++NTTWDL++DIEKLR+HL+IPEW VFGGSWGSTLALAYS +HPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWE FRDLIPEN
Sbjct:   16 VRFFPSNHNNLNLLFPGQRKIQVSC---GGKSEVLKSDTMEPHEAETFVNKRTLYAPIEPYSSGNLKVSDVHTLYWEQSGKPDGHPVVFLHGGPGGGTAPSNRRFFDPEFYRIVLFDQRGAGKSTPHACLEENTTWDLVNDIEKLREHLKIPEWLVFGGSWGSTLALAYSQSHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWEEFRDLIPEN 231          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_PLEBO (Probable proline iminopeptidase OS=Plectonema boryanum GN=pip PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.728e-66
Identity = 115/164 (70.12%), Postives = 135/164 (82.32%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIP 671
            LYP + PY +G+L VS +HTIY+EQSGNP G PVVFLHGGPGGGT P+ R++FDP  +RIILFDQRGAGKSTPHA L +NTTWDL+ DIEKLR HL I  W VFGGSWGSTL+LAYS  HPD+  GL+LRGIFLLR+KEI WFY+ GA+ I+PDAWE + + IP
Sbjct:    4 LYPAIAPYQSGMLPVSALHTIYYEQSGNPNGKPVVFLHGGPGGGTIPTYRQYFDPSKWRIILFDQRGAGKSTPHAELRENTTWDLVSDIEKLRSHLNIDRWFVFGGSWGSTLSLAYSQTHPDRCLGLILRGIFLLRRKEILWFYQDGASWIFPDAWEHYLEPIP 167          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_XYLFA (Proline iminopeptidase OS=Xylella fastidiosa GN=pip PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.953e-59
Identity = 105/164 (64.02%), Postives = 125/164 (76.22%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIP 671
            LYP V P+  GIL V D H +Y+EQ GNP G PVV LHGGPG G     RRF DPD YRI+LFDQRGAG+STPHA L  NTTWDL+ DIEKLR  L I  WQVFGGSWGSTLALAY+  HP++ T LVLRGIF+LR+ E++WFY+ GA+ ++PDAW+ +  +IP
Sbjct:    4 LYPEVTPFEHGILCVDDNHRLYYEQCGNPHGKPVVILHGGPGSGCNDKMRRFHDPDKYRIVLFDQRGAGRSTPHANLTNNTTWDLVADIEKLRVALGITRWQVFGGSWGSTLALAYAQTHPEQTTELVLRGIFMLRRWELEWFYQEGASHLFPDAWDRYIAVIP 167          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_XYLFT (Proline iminopeptidase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=pip PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.326e-58
Identity = 104/164 (63.41%), Postives = 124/164 (75.61%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIP 671
            LYP V P+  G+L V D H +Y+EQ GNP G PVV LHGGPGGG     RRF DPD YRI+LFDQRGAG+S PHA L  NTTWDL+ DIEKLR  L I  WQVFGGSWGSTLALAY+  HP++ T LVLRGIF+LR+ E++WFY+ GA+ ++PDAW+ +   IP
Sbjct:    4 LYPEVTPFDHGMLCVDDSHRLYYEQCGNPHGKPVVILHGGPGGGCNDKMRRFHDPDKYRIVLFDQRGAGRSMPHANLTNNTTWDLVADIEKLRVALGITRWQVFGGSWGSTLALAYAQTHPEQTTELVLRGIFMLRRWELEWFYQEGASRLFPDAWDRYIAAIP 167          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_XANCI (Proline iminopeptidase OS=Xanthomonas campestris pv. citri GN=pip PE=1 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.266e-57
Identity = 103/164 (62.80%), Postives = 122/164 (74.39%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIP 671
            LYP + PY  G LKV D HT+Y+EQ GNP G PVV LHGGPGGG     RRF DP  YRI+LFDQRG+G+STPHA L  NTTWDL+ DIE+LR HL +  WQVFGGSWGSTLALAY+         LVLRGIFLLR+ E++WFY+ GA+ ++PDAWE + + IP
Sbjct:    4 LYPEITPYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMRRFHDPAKYRIVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAADPSAAGHQLVLRGIFLLRRFELEWFYQEGASRLFPDAWEHYLNAIP 167          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_NEIMB (Proline iminopeptidase OS=Neisseria meningitidis serogroup B GN=pip PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 97/167 (58.08%), Postives = 124/167 (74.25%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYE-GGAAAIYPDAWESFRDLIPEN 677
            +Y   +P+ +G L+VS+IH IYWE+SGNP G PV+FLHGGPG G +P  R FF+PD +RI++ DQRG G+S P+AC + NTTWDL+ DIEK+R+ L I +W VFGGSWGSTL+LAY+  HP++V GLVLRGIFL R  E  W  E GG + IYP+ W+ F   I EN
Sbjct:    1 MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAGASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAEDNTTWDLVADIEKVREMLGIGKWLVFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETVWLNEAGGVSRIYPEQWQKFVAPIAEN 167          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_NEIMA (Proline iminopeptidase OS=Neisseria meningitidis serogroup A GN=pip PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 97/167 (58.08%), Postives = 124/167 (74.25%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYE-GGAAAIYPDAWESFRDLIPEN 677
            +Y   +P+ +G L+VS+IH IYWE+SGNP G PV+FLHGGPG G +P  R FF+PD +RI++ DQRG G+S P+AC + NTTWDL+ DIEK+R+ L I +W VFGGSWGSTL+LAY+  HP++V GLVLRGIFL R  E  W  E GG + IYP+ W+ F   I EN
Sbjct:    1 MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAGASPECRGFFNPDVFRIVIIDQRGCGRSRPYACAEDNTTWDLVADIEKVREMLGIGKWLVFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETVWLNEAGGVSRIYPEQWQKFVAPIAEN 167          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_NEIGO (Proline iminopeptidase OS=Neisseria gonorrhoeae GN=pip PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 97/167 (58.08%), Postives = 124/167 (74.25%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYE-GGAAAIYPDAWESFRDLIPEN 677
            +Y   +P+ +G L+VS+IH IYWE+SGNP G PV+FLHGGPG G +P  R FF+PD +RI++ DQRG G+S P+AC + NTTWDL+ DIEK+R+ L I +W VFGGSWGSTL+LAY+  HP++V GLVLRGIFL R  E  W  E GG + IYP+ W+ F   I EN
Sbjct:    1 MYEIKQPFHSGYLQVSEIHQIYWEESGNPDGVPVIFLHGGPGAGASPECRGFFNPDVFRIVIIDQRGCGRSHPYACAEDNTTWDLVADIEKVREMLGIGKWLVFGGSWGSTLSLAYAQTHPERVKGLVLRGIFLCRPSETAWLNEAGGVSRIYPEQWQKFVAPIAEN 167          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_SERMA (Proline iminopeptidase OS=Serratia marcescens GN=pip PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.517e-54
Identity = 90/166 (54.22%), Postives = 122/166 (73.49%), Query Frame = 3
Query:  180 LYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPEN 677
            LYP +  Y +G L   D H IYWE SGNP G P VF+HGGPGGG +P +R+ FDP+ Y+++LFDQRG G+S PHA LD NTTW L+ DIE+LR+   + +W VFGGSWGSTLALAY+  HP++V+ +VLRGIF LRK+ + W+Y+ GA+  +P+ WE    ++ ++
Sbjct:    7 LYPPLAAYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISPHHRQLFDPERYKVLLFDQRGCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWERVLSILSDD 172          
BLAST of FC920311 vs. ExPASy Swiss-Prot
Match: PIP_STRCO (Probable proline iminopeptidase OS=Streptomyces coelicolor GN=SCO1989 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.404e-37
Identity = 81/170 (47.65%), Postives = 101/170 (59.41%), Query Frame = 3
Query:  177 NLYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHAC-----LDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIP 671
            +LYP +EPY  G+L V D + +YWE  GNP G P V LHGGPG   +P  RR+FDP  YRI+L DQRGAG+S P A      +  NTT  L+ D+E+LR HL I  W V+G SWGS L L Y+  HP  VT LVL G+      E+      G   I+P+A E F   +P
Sbjct:    2 SLYPEIEPYDHGMLDVGDGNHVYWETCGNPHGKPAVVLHGGPGSRASPGLRRYFDPAAYRIVLLDQRGAGRSLPRASAPDTDMSVNTTAHLMADLERLRVHLGIERWLVWGVSWGSVLGLRYAQTHPGVVTELVLTGVATGSNAEVA-LLTRGLGNIFPEAHERFLAELP 170          
The following BLAST results are available for this feature:
BLAST of FC920311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIP_ARATH5.898e-9173.06Proline iminopeptidase OS=Arabidopsis thaliana GN=... [more]
PIP_PLEBO1.728e-6670.12Probable proline iminopeptidase OS=Plectonema bory... [more]
PIP_XYLFA5.953e-5964.02Proline iminopeptidase OS=Xylella fastidiosa GN=pi... [more]
PIP_XYLFT1.326e-5863.41Proline iminopeptidase OS=Xylella fastidiosa (stra... [more]
PIP_XANCI4.266e-5762.80Proline iminopeptidase OS=Xanthomonas campestris p... [more]
PIP_NEIMB2.341e-5558.08Proline iminopeptidase OS=Neisseria meningitidis s... [more]
PIP_NEIMA2.341e-5558.08Proline iminopeptidase OS=Neisseria meningitidis s... [more]
PIP_NEIGO2.341e-5558.08Proline iminopeptidase OS=Neisseria gonorrhoeae GN... [more]
PIP_SERMA1.517e-5454.22Proline iminopeptidase OS=Serratia marcescens GN=p... [more]
PIP_STRCO6.404e-3747.65Probable proline iminopeptidase OS=Streptomyces co... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006G01EF RVDevelop1 Citrus clementina cDNA clone C32006G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920311 ID=FC920311; Name=FC920311; organism=Citrus clementina; type=EST; length=678bp
GGCTTCCTCACACCTCCACTTTATCTCGTCTCAGGTTCCTCCCTTCATCC
CATCAGAATTTCACTCTCGCAGGGAGGAAGGATTTAGTAATACGTGCACA
AAATTTTGGGGTTAAGAGTGAGCCAAAGCTCATTGATATGATGGAATCAG
GAAAGGAATTACCAGAATTGAATACGAATCTTTATCCTTATGTAGAGCCA
TACAGTACAGGCATTTTGAAGGTTTCTGATATTCACACAATCTACTGGGA
GCAGTCTGGAAACCCTACCGGGCATCCTGTTGTGTTTCTTCATGGAGGTC
CAGGAGGAGGCACTACACCAAGTAATCGAAGATTCTTTGATCCCGATTTT
TACCGTATCATTTTATTTGATCAGCGAGGTGCAGGAAAAAGTACCCCTCA
TGCTTGCTTGGATCAAAACACCACATGGGATCTCATTGATGACATTGAAA
AGTTGAGACAACACCTAGAAATTCCAGAATGGCAGGTATTTGGTGGATCA
TGGGGAAGCACACTTGCTCTTGCATACAGCCTGGCACACCCCGACAAGGT
TACTGGCTTGGTCCTCAGGGGGATCTTTCTTTTGCGAAAGAAAGAGATTG
ATTGGTTTTATGAGGGTGGTGCTGCTGCTATATACCCTGATGCATGGGAG
TCATTCAGAGACCTCATTCCAGAAAATG
back to top