FC920315

Overview
NameFC920315
Unique NameFC920315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 367.851 bits (943), Expect = 3.049e-101
Identity = 183/207 (88.41%), Postives = 193/207 (93.24%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQS--DKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV+LGANKFSERQPIGT+AQ   DKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGV+ S +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FYMVMQCLGAICGAGVVKGF+    YE  GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVP L
Sbjct:    7 DVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQKGL-YETTGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPIL 212          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.158e-100
Identity = 179/205 (87.32%), Postives = 191/205 (93.17%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV++GANKF ERQPIGTSAQSDKDYKEPPPAPLFEPGEL SWSF+RAGIAEF+ATFLFLYITVLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRAV+Y+VMQCLGAICGAGVVKGF+  K Y+ LGGGAN +AHGYTKG GLGAEIIGTFVLVYTVFSATDAKRNARDSHVP L
Sbjct:    7 DVRVGANKFPERQPIGTSAQSDKDYKEPPPAPLFEPGELASWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPIL 210          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.513e-100
Identity = 180/205 (87.80%), Postives = 191/205 (93.17%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DVKLGANKF E QP+GT+AQ+DKDYKEPPPAPLFEPGEL SWSFYRAGIAEFMATFLFLYIT+LTVMG+ +S++ CS+VGIQG+AWAFGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRAVFYMVMQCLGAICGAGVVKGF     Y+RLGGGANVV  GYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVP L
Sbjct:    8 DVKLGANKFRETQPLGTAAQTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFMATFLFLYITILTVMGLKRSDSLCSSVGIQGVAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGP-YQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPIL 211          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 4.402e-100
Identity = 178/205 (86.83%), Postives = 190/205 (92.68%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV++GANKF ERQPIGTSAQSDKDYKEPPPAP FEPGEL SWSF+RAGIAEF+ATFLFLYITVLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRA++Y+VMQCLGAICGAGVVKGF+  K Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKRNARDSHVP L
Sbjct:    7 DVRVGANKFPERQPIGTSAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPIL 210          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 4.402e-100
Identity = 178/205 (86.83%), Postives = 190/205 (92.68%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV++GANKF ERQPIGTSAQSDKDYKEPPPAP FEPGEL SWSF+RAGIAEF+ATFLFLYITVLTVMGV +S   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRA++Y+VMQCLGAICGAGVVKGF+  K Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKRNARDSHVP L
Sbjct:    7 DVRVGANKFPERQPIGTSAQSDKDYKEPPPAPFFEPGELSSWSFWRAGIAEFIATFLFLYITVLTVMGVKRSPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQ-PKQYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPIL 210          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 362.844 bits (930), Expect = 9.807e-100
Identity = 181/211 (85.78%), Postives = 193/211 (91.47%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQS------DKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV+LGANKFSERQPIGT+AQ       DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF+ATFLFLYITVLTVMGVSKS +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FY++MQCLGAICGAGVVKGF+    Y   GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVP L
Sbjct:    7 DVRLGANKFSERQPIGTAAQGAGAGDDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGL-YMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPIL 216          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.281e-99
Identity = 179/208 (86.06%), Postives = 193/208 (92.79%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQS---DKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV+LGANKFSERQPIGT+AQ    DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF+ATFLFLYIT+LTVMGVSKS +KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FY++MQCLGA+CGAGVVKGF+    Y   GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVP L
Sbjct:    7 DVRLGANKFSERQPIGTAAQGAADDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGL-YMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPIL 213          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.281e-99
Identity = 179/208 (86.06%), Postives = 194/208 (93.27%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQS---DKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV+LGAN++SERQPIGT+AQ    DKDYKEPPPAPLFEPGELKSWSFYRAGIAEF+ATFLFLYIT+LTVMGVSKS++KC+TVGIQGIAW+FGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRA+FY+VMQCLGAICGAGVVKGF+    Y   GGGANVVA GYTKGDGLGAEI+GTF+LVYTVFSATDAKRNARDSHVP L
Sbjct:    7 DVRLGANRYSERQPIGTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGL-YMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPIL 213          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.185e-99
Identity = 177/205 (86.34%), Postives = 190/205 (92.68%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQSDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV++GANKF ERQPIGTSAQ+DKDYKEPPPAP FEPGEL SWSFYRAGIAEF+ATFLFLYITVLTVMGV ++   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRAVFY+VMQCLGAICGAGVVKGF+ +  Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVP L
Sbjct:    7 DVRVGANKFPERQPIGTSAQTDKDYKEPPPAPFFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNP-YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPIL 210          
BLAST of FC920315 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 3.727e-99
Identity = 179/206 (86.89%), Postives = 191/206 (92.72%), Query Frame = 1
Query:   88 DVKLGANKFSERQPIGTSAQS-DKDYKEPPPAPLFEPGELKSWSFYRAGIAEFMATFLFLYITVLTVMGVSKSNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPYL 702
            DV++GANKF ERQPIGTSAQS DKDYKEPPPAPLFEPGEL SWSFYRAGIAEF+ATFLFLYITVLTVMGV ++   C++VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGL LARKLSLTRAVFYM+MQCLGAICGAGVVKGF+ +  Y+ LGGGAN VAHGYTKG GLGAEIIGTFVLVYTVFSATDAKR+ARDSHVP L
Sbjct:    7 DVRVGANKFPERQPIGTSAQSTDKDYKEPPPAPLFEPGELSSWSFYRAGIAEFIATFLFLYITVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQPTP-YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPIL 211          
The following BLAST results are available for this feature:
BLAST of FC920315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
PIP12_ORYSJ3.049e-10188.41Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH1.158e-10087.32Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP1_SOLLC1.513e-10087.80Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP11_VICFA4.402e-10086.83Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH4.402e-10086.83Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP13_MAIZE9.807e-10085.78Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_MAIZE1.281e-9986.06Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP11_ORYSJ1.281e-9986.06Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_ARATH2.185e-9986.34Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP14_ARATH3.727e-9986.89Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC32006G05EF RVDevelop1 Citrus clementina cDNA clone C32006G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920315 ID=FC920315; Name=FC920315; organism=Citrus clementina; type=EST; length=703bp
CATACACAACACAAACACAGCATCTTCTTTGAGAGAATAAGAGAGCGAGA
GAGAGGTTCATCATCGTCAATGGAAGGCAAAGAAGAGGATGTTAAGCTAG
GAGCTAACAAGTTCTCAGAGAGGCAACCCATTGGGACATCAGCTCAATCA
GACAAAGACTACAAGGAGCCACCACCAGCACCTTTGTTTGAGCCTGGTGA
GCTCAAGTCATGGTCTTTTTACAGAGCTGGTATTGCAGAGTTCATGGCTA
CCTTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTCTCTAAG
TCTAACACCAAGTGCTCCACTGTCGGTATCCAAGGAATTGCTTGGGCCTT
TGGTGGCATGATCTTTGCCCTTGTTTACTGCACTGCTGGTATCTCAGGAG
GACACATCAACCCAGCAGTGACCTTCGGTCTGCTGCTAGCGAGGAAGCTT
TCCCTGACAAGAGCTGTCTTCTACATGGTCATGCAGTGCCTTGGTGCCAT
CTGTGGTGCTGGTGTTGTCAAGGGATTCGAAGGTTCAAAGAACTACGAGA
GGTTGGGTGGTGGAGCCAATGTTGTTGCTCACGGCTACACCAAGGGTGAT
GGTCTTGGTGCTGAGATTATTGGAACCTTTGTTCTTGTTTACACTGTCTT
CTCTGCCACTGATGCCAAGAGAAACGCCAGAGATTCTCATGTCCCCTATT
TGG
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