FC920324

Overview
NameFC920324
Unique NameFC920324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2608 contig Ccv1_Contig2608:27..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_VITVI (Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.657e-18
Identity = 32/120 (26.67%), Postives = 59/120 (49.17%), Query Frame = 3
Query:  150 RETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEVSS 509
            ++  HL  L  A+T L L++            + GCTGVFH+A+P   +  +DP+N+++ P ++G + ++ +  A    R              +     V DE CW+D E+CR  ++++
Sbjct:   43 KKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFES-KDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQL-PVYDESCWSDMEFCRAKKMTA 160          

HSP 2 Score: 51.9878 bits (123), Expect = 1.657e-18
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 2
Query:   23 MSKEAEVVCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            M  ++E VCVTG SG IGSWLV  LLERR TV ATV
Sbjct:    1 MGSQSETVCVTGASGFIGSWLVMRLLERRLTVRATV 36          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_MALDO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.435e-16
Identity = 31/116 (26.72%), Postives = 56/116 (48.28%), Query Frame = 3
Query:  144 DERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCR 491
            ++++  HL  L  A+T L L++            + GC+GVFH+A+P   +  +DP+N+++ P + G +++L A +     R              +     V DE  W+D E+CR
Sbjct:   41 NQKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFES-KDPENEVIKPTINGLLDILKACQKAKTVRKLVFTSSAGTVNVEE-HQKPVYDESNWSDVEFCR 154          

HSP 2 Score: 50.8322 bits (120), Expect = 1.435e-16
Identity = 25/36 (69.44%), Postives = 26/36 (72.22%), Query Frame = 2
Query:   23 MSKEAEVVCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            M  E+E VCVTG SG IGSWLV  LLE  YTV ATV
Sbjct:    1 MGSESESVCVTGASGFIGSWLVMRLLEHGYTVRATV 36          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_PYRCO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.865e-16
Identity = 31/116 (26.72%), Postives = 55/116 (47.41%), Query Frame = 3
Query:  144 DERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCR 491
            ++++  HL  L  A+T L L++            + GC+GVFH+A+P   +   DP+N+++ P + G +++L A +     R              +     V DE  W+D E+CR
Sbjct:   41 NQKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIQGCSGVFHVATPMDFES-RDPENEVIKPTINGLLDILKACQKAKTVRKLVFTSSAGTVNVEE-HQKPVYDESNWSDVEFCR 154          

HSP 2 Score: 50.8322 bits (120), Expect = 1.865e-16
Identity = 25/36 (69.44%), Postives = 26/36 (72.22%), Query Frame = 2
Query:   23 MSKEAEVVCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            M  E+E VCVTG SG IGSWLV  LLE  YTV ATV
Sbjct:    1 MGSESESVCVTGASGFIGSWLVMRLLEHGYTVRATV 36          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_HORVU (Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=ANT18 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.973e-15
Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 3
Query:  153 ETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQ 494
            +T  L  L GA  RL +++            + GCTGVFH+A+P   D  +DP+N+++ P V+G ++++ A K  G  +              + P     D+D W+D +YCR+
Sbjct:   44 KTKPLLELPGAKERLSIWKADLSEDGSFNEAIAGCTGVFHVATPMDFDS-QDPENEVIKPTVEGMLSIMRACKEAGTVKRIVFTSSAGSVNIEERPR-PAYDQDNWSDIDYCRR 155          

HSP 2 Score: 39.6614 bits (91), Expect = 1.973e-15
Identity = 19/29 (65.52%), Postives = 21/29 (72.41%), Query Frame = 2
Query:   44 VCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            V VTG SG +GSWLV  LL+  YTV ATV
Sbjct:    8 VVVTGASGFVGSWLVMKLLQAGYTVRATV 36          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_GERHY (Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.325e-15
Identity = 33/124 (26.61%), Postives = 61/124 (49.19%), Query Frame = 3
Query:  141 GDERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEVSS 509
            GD ++  HL  L  A T L+L++            + GC GVFHLA+P   +  +DP+N+++ P ++G ++++ +  KA  VK+              K     V DE  W+D ++    ++++
Sbjct:   41 GDLKKVKHLLELPKAQTNLKLWKADLTQEGSFDEAIQGCHGVFHLATPMDFES-KDPENEIIKPTIEGVLSIIRSCVKAKTVKKLVFTSSAGTVNGQEK--QLHVYDESHWSDLDFIYSKKMTA 161          

HSP 2 Score: 47.3654 bits (111), Expect = 4.325e-15
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2
Query:   44 VCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            VCVTG +G IGSWLV  LLER Y VHATV
Sbjct:    9 VCVTGAAGFIGSWLVMRLLERGYVVHATV 37          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_DIACA (Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.327e-15
Identity = 30/114 (26.32%), Postives = 53/114 (46.49%), Query Frame = 3
Query:  150 RETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTAAKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCR 491
            ++  HL  L  A T L L++            V GCTGVFH+A+P   +  +DP+N+++ P + G +++L +     ++R              +     V DE CW+  ++ R
Sbjct:   60 KKVQHLLDLPNAKTNLTLWKADLHEEGSFDAAVDGCTGVFHIATPMDFES-KDPENEMIKPTINGMLDILKSCVKAKLRR--VVFTSSGGTVNVEATQKPVYDETCWSALDFIR 170          

HSP 2 Score: 49.6766 bits (117), Expect = 4.327e-15
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 2
Query:   32 EAEVVCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            + E VCVTG SG IGSWL+  LLER YTV ATV
Sbjct:   21 QGETVCVTGASGFIGSWLIMRLLERGYTVRATV 53          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_MAIZE (Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 7.309e-15
Identity = 35/115 (30.43%), Postives = 59/115 (51.30%), Query Frame = 3
Query:  153 ETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKV-EDPQNQLLNPAVKGTVNVLTAAKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQ 494
            +T  L  L GA  RL +++            + GCTGVFH+A+P  +D + +DP+N+++ P V+G ++++ A K  G  R              +     V DE+ WTD ++CR+
Sbjct:   49 KTKPLMDLPGATERLSIWKADLAEEGSFHDAIRGCTGVFHVATP--MDFLSKDPENEVIKPTVEGMISIMRACKEAGTVRRIVFTSSAGTVNLEE-RQRPVYDEESWTDVDFCRR 160          

HSP 2 Score: 40.817 bits (94), Expect = 7.309e-15
Identity = 20/35 (57.14%), Postives = 23/35 (65.71%), Query Frame = 2
Query:   26 SKEAEVVCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            + E   V VTG SG +GSWLV  LL+  YTV ATV
Sbjct:    7 ASEKGTVLVTGASGFVGSWLVMKLLQAGYTVRATV 41          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_PETHY (Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 9.482e-15
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  144 DERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGVKR 389
            ++++  HL  L  ADT L L++            + GC GVFH+A+P   +  +DP+N+++ P V+G ++++ + AKA  VKR
Sbjct:   51 NKKKVKHLLELPKADTNLTLWKADLTVEGSFDEAIQGCQGVFHVATPMDFES-KDPENEVIKPTVRGMLSIIESCAKANTVKR 132          

HSP 2 Score: 47.3654 bits (111), Expect = 9.482e-15
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2
Query:   44 VCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            VCVTG +G IGSWLV  LLER Y VHATV
Sbjct:   18 VCVTGAAGFIGSWLVMRLLERGYNVHATV 46          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_SOLLC (Dihydroflavonol-4-reductase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.702e-14
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  144 DERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVL-TAAKALGVKR 389
            ++++  HL  L  ADT L L++            + GC GVFH+A+P   +  +DP+N+++ P V+G ++++ + AKA  VKR
Sbjct:   53 NQKKVKHLLELPKADTNLTLWKADLAVEGSFDEAIQGCQGVFHVATPMDFES-KDPENEVIKPTVRGMLSIIESCAKANTVKR 134          

HSP 2 Score: 45.4394 bits (106), Expect = 2.702e-14
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2
Query:   44 VCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            V VTGG+G IGSWLV  LLER Y VHATV
Sbjct:   20 VWVTGGAGFIGSWLVMRLLERGYNVHATV 48          
BLAST of FC920324 vs. ExPASy Swiss-Prot
Match: DFRA_ARATH (Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=2 SV=2)

HSP 1 Score: 50.8322 bits (120), Expect = 3.510e-14
Identity = 33/123 (26.83%), Postives = 57/123 (46.34%), Query Frame = 3
Query:  141 GDERETAHLKALEGADTRLRLFQXXXXXXXXXXXXVTGCTGVFHLASPCIVDKVEDPQNQLLNPAVKGTVNVLTA-AKALGVKRXXXXXXXXXXXXXXKWPADKVKDEDCWTDEEYCRQNEVS 506
            G+ ++  HL  L  A T L L++            + GC GVFH+A+P   +  +DP+N+++ P V G + ++ A  KA  V+R                    V DE+ W+D E+    +++
Sbjct:   40 GNLKKVQHLLDLPNAKTLLTLWKADLSEEGSYDDAINGCDGVFHVATPMDFES-KDPENEVIKPTVNGMLGIMKACVKAKTVRRFVFTSSAGTVNVEEH--QKNVYDENDWSDLEFIMSKKMT 159          

HSP 2 Score: 48.1358 bits (113), Expect = 3.510e-14
Identity = 24/36 (66.67%), Postives = 25/36 (69.44%), Query Frame = 2
Query:   23 MSKEAEVVCVTGGSGCIGSWLVRLLLERRYTVHATV 130
            M  + E VCVTG SG IGSWLV  LLER Y V ATV
Sbjct:    1 MVSQKETVCVTGASGFIGSWLVMRLLERGYFVRATV 36          
The following BLAST results are available for this feature:
BLAST of FC920324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
DFRA_VITVI1.657e-1826.67Dihydroflavonol-4-reductase OS=Vitis vinifera GN=D... [more]
DFRA_MALDO1.435e-1626.72Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_PYRCO1.865e-1626.72Bifunctional dihydroflavonol 4-reductase/flavanone... [more]
DFRA_HORVU1.973e-1529.82Dihydroflavonol-4-reductase OS=Hordeum vulgare GN=... [more]
DFRA_GERHY4.325e-1526.61Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=... [more]
DFRA_DIACA4.327e-1526.32Dihydroflavonol-4-reductase OS=Dianthus caryophyll... [more]
DFRA_MAIZE7.309e-1530.43Dihydroflavonol-4-reductase OS=Zea mays GN=A1 PE=3... [more]
DFRA_PETHY9.482e-1533.73Dihydroflavonol-4-reductase OS=Petunia hybrida GN=... [more]
DFRA_SOLLC2.702e-1433.73Dihydroflavonol-4-reductase OS=Solanum lycopersicu... [more]
DFRA_ARATH3.510e-1426.83Dihydroflavonol-4-reductase OS=Arabidopsis thalian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32006H05EF RVDevelop1 Citrus clementina cDNA clone C32006H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920324 ID=FC920324; Name=FC920324; organism=Citrus clementina; type=EST; length=668bp
ACAGCGGATACCGATAGAGAAAATGTCCAAAGAAGCTGAGGTGGTTTGCG
TCACCGGCGGCAGCGGCTGCATCGGCTCCTGGCTGGTCCGTCTCCTTCTC
GAACGCCGCTACACTGTTCACGCCACTGTCAAAAATCTCAGGTGATGAAA
GAGAAACAGCTCATCTCAAAGCGCTAGAAGGAGCTGACACGCGTCTCCGT
CTCTTCCAAATCGACCTCCTCGATTACGACGCCATCGCCGCCGCGGTCAC
CGGCTGTACTGGTGTCTTCCACTTGGCCTCACCTTGCATTGTCGACAAAG
TCGAAGATCCTCAGAACCAGCTTTTGAATCCCGCGGTTAAAGGAACCGTT
AACGTACTCACCGCAGCTAAGGCACTGGGAGTGAAGCGCGTGGTCGTAAC
GTCATCGATTTCCTCTATAACTCCTAGCCCGAAGTGGCCCGCTGATAAAG
TCAAAGATGAGGATTGCTGGACCGATGAAGAGTACTGCAGGCAAAATGAA
GTAAGTAGCTGCAGTCTGCAGTCTGCAGGCAAAATGAAGTAACACTGACT
TTAAACAAGAACTCGTGAATTGTAATTGCTGAACGGTGAATTTCAGGATT
ATTAATTTTTGCTTAATTAATTTTTGAGGGTTTTGAGTTGCTAATAGATC
GAAATTCTGAGCAAGTTT
back to top