FC920336

Overview
NameFC920336
Unique NameFC920336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15544 contig Ccv1_Contig15544:86..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_ORYSJ (Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 7.763e-103
Identity = 180/210 (85.71%), Postives = 196/210 (93.33%), Query Frame = 3
Query:   57 MDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            M S SVF  + +APEDPILGVTVAYNKD SPVK+NLGVGAYRTEEGKPLVLNVVR+AEQ+L+N+ SRVKEYLPI GL DFNKLSAKLI GADSPAI++NRV TVQCLSGTGSLRVG EFLARHYH+ TIYIPQPTWGNHPKVFTLAGL+V++YRYYDPATRGL+FQGLLEDL +APSGAIVLLHACAHNPTGVDPTL+QWEQIRQLMRSK
Sbjct:    1 MASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHERTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDPTLDQWEQIRQLMRSK 210          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.324e-102
Identity = 179/206 (86.89%), Postives = 194/206 (94.17%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            SVF  +VRAPEDPILGVTVAY+KD SP KLNLGVGAYRTEEGKPLVLNVV+KAEQ+LVNDQSRVKEYLPIVGL DFNKLSAKLI GADSPAI++NRV TVQCLSGTGSLRVG EFLARHYH+ T+YIPQPTWGNHPK+FTLAGLSVKTYRYY+P TRGL+F+G+LEDL +AP GAIVLLHACAHNPTGVDPT+EQWEQIRQLMRSK
Sbjct:    3 SVFANVVRAPEDPILGVTVAYHKDQSPNKLNLGVGAYRTEEGKPLVLNVVKKAEQMLVNDQSRVKEYLPIVGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHEHTVYIPQPTWGNHPKIFTLAGLSVKTYRYYNPETRGLDFEGMLEDLGSAPLGAIVLLHACAHNPTGVDPTIEQWEQIRQLMRSK 208          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT3_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.729e-102
Identity = 178/206 (86.41%), Postives = 196/206 (95.15%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            SVF  +V+APEDPILGVTVAYNKD SPVKLNLGVGAYRTEEGKPLVLNVVRKAEQ L+ND++R+KEYLPIVGLV+FNKLSAKLILGADSPAI++NR+TTV+CLSGTGSLRVG EFLA+HYHQ TIYI QPTWGNHPK+FTLAGL+VKTYRYYDPATRGLNFQGLLEDL AA  G+IVLLHACAHNPTGVDPT++QWEQIR+LMRSK
Sbjct:   47 SVFSHLVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLINDRTRIKEYLPIVGLVEFNKLSAKLILGADSPAIRENRITTVECLSGTGSLRVGGEFLAKHYHQKTIYITQPTWGNHPKIFTLAGLTVKTYRYYDPATRGLNFQGLLEDLGAAAPGSIVLLHACAHNPTGVDPTIQQWEQIRKLMRSK 252          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT2_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 1.790e-99
Identity = 177/207 (85.51%), Postives = 190/207 (91.79%), Query Frame = 3
Query:   66 ESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            +SVF  + RAPEDPILGVTVAYN D SPVK+NLGVGAYRTEEGKPLVL+VVRKAEQ LVND SRVKEY+PIVG+ DFNKLSAKLILGADSPAI ++RVTTVQCLSGTGSLRVGAEFL  HYHQ  IYIP+PTWGNHPKVF LAGLSV+ +RYYDPATRGL+F+GLLEDL AAPSGAIVLLHACAHNPTGVDPT EQWEQIRQLMRSK
Sbjct:    2 DSVFSNVARAPEDPILGVTVAYNNDPSPVKINLGVGAYRTEEGKPLVLDVVRKAEQQLVNDPSRVKEYIPIVGISDFNKLSAKLILGADSPAITESRVTTVQCLSGTGSLRVGAEFLKTHYHQSVIYIPKPTWGNHPKVFNLAGLSVEYFRYYDPATRGLDFKGLLEDLGAAPSGAIVLLHACAHNPTGVDPTSEQWEQIRQLMRSK 208          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 354.755 bits (909), Expect = 2.857e-97
Identity = 172/208 (82.69%), Postives = 190/208 (91.35%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            S+SVF  +VRAPEDPILGVTVAYNKD SP+KLNLGVGAYRTEEGKPLVL+VVR+ E+ L+ND SR KEY+PIVGL DFNKLSAKLI GADSPAI++NRVTTVQ LSGTGSLRVG EFLA+HYHQ  IY+P PTWGNH KVF LAGL+VKTYRYY PATRGL+FQGLLEDL +APSG++VLLHACAHNPTGVDPTLEQWEQIRQL+RSK
Sbjct:   14 SDSVFAHLVRAPEDPILGVTVAYNKDPSPIKLNLGVGAYRTEEGKPLVLDVVRRVERQLLNDMSRNKEYIPIVGLADFNKLSAKLIFGADSPAIQENRVTTVQGLSGTGSLRVGGEFLAKHYHQRIIYLPTPTWGNHTKVFNLAGLTVKTYRYYAPATRGLDFQGLLEDLGSAPSGSVVLLHACAHNPTGVDPTLEQWEQIRQLIRSK 221          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT4_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 2 OS=Arabidopsis thaliana GN=ASP4 PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.575e-79
Identity = 143/206 (69.42%), Postives = 168/206 (81.55%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            S+   ++ APEDP+L V  A   D SPVKLNL  G YRTEEGKPLVL+VVR+AEQ L ND    KEYLP+ GL +FNKLS KLILG DSPA+K+NRV T QCLSGTGSLRVGAEFLA H  +  I++P PTWGNHP++FTLAGLSV+ +RYYDP +RGL+F+G+LEDL AAP GAIV+L ACAHNPTGVDPT EQWE+IR+L+RSK
Sbjct:    3 SILSSVLPAPEDPVLSVIFACRDDPSPVKLNLSAGTYRTEEGKPLVLDVVRRAEQQLANDLD--KEYLPLNGLPEFNKLSTKLILGDDSPALKENRVVTTQCLSGTGSLRVGAEFLATHNKESVIFVPNPTWGNHPRIFTLAGLSVQYFRYYDPKSRGLDFKGMLEDLGAAPPGAIVVLQACAHNPTGVDPTFEQWEKIRRLVRSK 206          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_DICDI (Aspartate aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=aatA PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 113/213 (53.05%), Postives = 156/213 (73.24%), Query Frame = 3
Query:   48 RNLMDSESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            R    + + +  + + PEDPILGV++AYNKDTSP K+NLGVGAYR E GKP VL+ V+KA++ +  + +   EY PIVG+  FN+L+A+L LG +   IK+ R+ TVQ +SGTG+LR+ A+F AR     T Y+P PTWGNH  +F  AG+ VK+Y YY+PAT GLNF+ + +D+ AAP G+I+LLHACAHNPTGVDPT EQW++I ++ + +
Sbjct:   19 RQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPSKINLGVGAYRDENGKPYVLDCVKKADKKIY-EANVDHEYAPIVGVAAFNQLAAQLALGEECKHIKEKRIATVQSISGTGALRIAADFFARFLKGKTAYVPNPTWGNHNVIFNDAGIPVKSYGYYNPATCGLNFEAMTKDIAAAPEGSIILLHACAHNPTGVDPTAEQWKKISEICKER 230          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_LUPAN (Aspartate aminotransferase P2, mitochondrial (Fragment) OS=Lupinus angustifolius PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.984e-62
Identity = 119/207 (57.49%), Postives = 150/207 (72.46%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            S F  I  AP DPILGV+ A+  DTS  KLNLGVGAYRTEE +P VL VV KAE L++ ++ + KEYL I GL  FNK +A+L+LGAD+PAIK  RV TVQ LSGTGSLR+GA  + R++    + I  PTWGNH  +F  A +    YRYYDP T GL+F+G++ED++AAP G  VLLH CAHNPTG+DPT EQWE+I  +++ K+
Sbjct:   52 SRFEGIPMAPPDPILGVSEAFRADTSDAKLNLGVGAYRTEELQPYVLKVVNKAENLML-ERGQNKEYLAIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKAAPEGTFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKN 257          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AAT5_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP5 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 4.034e-59
Identity = 111/207 (53.62%), Postives = 147/207 (71.01%), Query Frame = 3
Query:   69 SVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHYHQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKD 689
            S F  I  AP DPILGV+ A+  DT+ +KLNLGVGAYRTEE +P VLNVV+KAE L++ ++   KEYLPI GL  FNK +A+L+ GA  P IK+ RV T+Q LSGTGSLR+ A  + R++    + I  PTWGNH  +F  A +    YRYYDP T GL+F+G++ D++ AP G+ +LLH CAHNPTG+DPT EQW +I  +++ K+
Sbjct:   51 SRFEGITMAPPDPILGVSEAFKADTNGMKLNLGVGAYRTEELQPYVLNVVKKAENLML-ERGDNKEYLPIEGLAAFNKATAELLFGAGHPVIKEQRVATIQGLSGTGSLRLAAALIERYFPGAKVVISSPTWGNHKNIFNDAKVPWSEYRYYDPKTIGLDFEGMIADIKEAPEGSFILLHGCAHNPTGIDPTPEQWVKIADVIQEKN 256          
BLAST of FC920336 vs. ExPASy Swiss-Prot
Match: AATM_XENTR (Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis GN=got2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57
Identity = 111/209 (53.11%), Postives = 146/209 (69.86%), Query Frame = 3
Query:   63 SESVFGKIVRAPEDPILGVTVAYNKDTSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQLLVNDQSRVKEYLPIVGLVDFNKLSAKLILGADSPAIKDNRVTTVQCLSGTGSLRVGAEFLARHY-HQLTIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPATRGLNFQGLLEDLRAAPSGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSK 686
            + S +  +   P DPILGVT A+ +DT+  K+NLGVGAYR + GKP VL+ VRKAE  L + ++  KEYLPI GL +F + SA+L LG +  AI+  R  TVQ +SGTGSLRVGA FL R Y +   +Y+P+P+WGNH  +F  AGL VK YRYYDP T G +F G L+D+   P  +I+L HACAHNPTGVDP  EQW+++  L++S+
Sbjct:   26 ASSWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLSSVRKAEAQLAS-KNLDKEYLPIGGLAEFARASAQLALGENCDAIQSGRFITVQTISGTGSLRVGANFLQRFYKYSRDVYLPKPSWGNHTPIFRDAGLEVKGYRYYDPKTCGFDFTGALDDISKIPEQSIILFHACAHNPTGVDPKQEQWKELAALIKSR 233          
The following BLAST results are available for this feature:
BLAST of FC920336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
AATC_ORYSJ7.763e-10385.71Aspartate aminotransferase, cytoplasmic OS=Oryza s... [more]
AATC_DAUCA1.324e-10286.89Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AAT3_ARATH1.729e-10286.41Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AAT2_ARATH1.790e-9985.51Aspartate aminotransferase, cytoplasmic isozyme 1 ... [more]
AAT1_MEDSA2.857e-9782.69Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
AAT4_ARATH1.575e-7969.42Aspartate aminotransferase, cytoplasmic isozyme 2 ... [more]
AATM_DICDI1.583e-6353.05Aspartate aminotransferase, mitochondrial OS=Dicty... [more]
AATM_LUPAN2.984e-6257.49Aspartate aminotransferase P2, mitochondrial (Frag... [more]
AAT5_ARATH4.034e-5953.62Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AATM_XENTR1.298e-5753.11Aspartate aminotransferase, mitochondrial OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionC32007A06EF RVDevelop1 Citrus clementina cDNA clone C32007A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920336 ID=FC920336; Name=FC920336; organism=Citrus clementina; type=EST; length=734bp
GATTTTTTTTTCCCCCACAAACTCTCTCTTTTCATTGATTTCTTGAAAGA
AATTTAATGGATTCTGAATCAGTGTTTGGAAAGATTGTTCGTGCTCCTGA
AGATCCCATTCTAGGGGTCACTGTTGCTTATAACAAGGATACAAGCCCAG
TCAAGTTGAACTTGGGTGTTGGTGCTTACCGAACTGAGGAAGGGAAACCT
CTGGTTCTGAATGTAGTGAGAAAGGCAGAGCAGCTCTTAGTGAATGACCA
GTCACGGGTCAAAGAGTATCTTCCCATTGTTGGACTTGTGGATTTTAATA
AATTGAGTGCAAAGCTCATCCTTGGTGCTGACAGCCCTGCGATTAAAGAC
AACAGAGTGACCACCGTTCAGTGCTTGTCTGGCACTGGTTCTTTGAGGGT
TGGAGCTGAGTTTCTGGCAAGGCATTATCACCAACTTACCATATATATTC
CACAGCCAACATGGGGAAACCATCCCAAAGTTTTCACTTTAGCAGGATTG
TCTGTGAAGACCTACCGCTATTATGATCCAGCAACACGTGGGCTAAACTT
CCAAGGCTTGCTGGAGGATCTTAGGGCTGCACCATCCGGAGCTATAGTTC
TTCTTCATGCATGTGCTCATAATCCAACTGGTGTTGACCCGACCCTTGAG
CAGTGGGAGCAGATCAGGCAGCTGATGAGGTCAAAGGATTGTTACCTTTC
TTGACAGTGCTATCAGGNTTTGCAGTGGTAGCTA
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