FC920342

Overview
NameFC920342
Unique NameFC920342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: AVP1_ARATH (Pyrophosphate-energized vacuolar membrane proton pump 1 OS=Arabidopsis thaliana GN=AVP1 PE=1 SV=1)

HSP 1 Score: 435.261 bits (1118), Expect = 1.568e-121
Identity = 215/235 (91.49%), Postives = 229/235 (97.45%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG++ERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAE+SCAALVVASISSFGINH+FT+M YPLLISS+GILVCLITTLFATD FE+K VKEIEP+LK QLIISTV+MTVGIAIVSW+GLP+SFTI+NFG QKVVKNWQLFLCV VGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA+SIFVSFSFAAMYG+AVAALGM
Sbjct:  259 GADLVGKIERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAEASCAALVVASISSFGINHDFTAMCYPLLISSMGILVCLITTLFATDFFEIKLVKEIEPALKNQLIISTVIMTVGIAIVSWVGLPTSFTIFNFGTQKVVKNWQLFLCVCVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFSFAAMYGVAVAALGM 493          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: AVP_PHAAU (Pyrophosphate-energized vacuolar membrane proton pump OS=Phaseolus aureus PE=1 SV=3)

HSP 1 Score: 428.713 bits (1101), Expect = 1.467e-119
Identity = 210/235 (89.36%), Postives = 230/235 (97.87%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFG+NHE T+MLYPL++SS+GILVCL+TTLFATD FE+KAVKEIEP+LKKQL+ISTVLMT+G+A+VS++ LP+SFTI+NFG QK VK+WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA+SIFVSF+FAAMYGIAVAALGM
Sbjct:  255 GADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAMYGIAVAALGM 489          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: AVP_HORVU (Pyrophosphate-energized vacuolar membrane proton pump OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 420.624 bits (1080), Expect = 3.996e-117
Identity = 206/235 (87.66%), Postives = 223/235 (94.89%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINH+FT+M YPLL+SS+GI+VCL+TTLFATD FE+KA  EIEP+LKKQLIIST LMTVG+A++SW+ LP+ FTI+NFGAQK V NW LF CVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSI+VSFS AAMYGIA+AALGM
Sbjct:  251 GADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDFTAMCYPLLVSSVGIIVCLLTTLFATDFFEIKAANEIEPALKKQLIISTALMTVGVAVISWLALPAKFTIFNFGAQKEVSNWGLFFCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSIAAMYGIAMAALGM 485          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_LEPIN (Pyrophosphate-energized proton pump OS=Leptospira interrogans GN=hppA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.659e-60
Identity = 119/235 (50.64%), Postives = 168/235 (71.49%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE+ IPEDDPRNPA IADNVGDNVGD+AGMG+DLFGS AE++CAALV+ + +S  ++    ++LYPLLIS+ GI   ++T+  A     VK    +E +LK QL +ST+L+   +  V+   +  SF I    A K +  W +++ + VGL++G+ IG VTEYYTS++Y PV++VA++  TGAATN+I+GL+LGY S +IP+  + ++I  +   A MYGIA+AALGM
Sbjct:  208 GADLVGKVEKGIPEDDPRNPATIADNVGDNVGDVAGMGADLFGSCAEATCAALVIGATAS-ALSGSVDALLYPLLISAFGIPASILTSFLA----RVKEDGNVESALKVQLWVSTLLVAGIMYFVTKTFMVDSFEI----AGKTITKWDVYISMVVGLFSGMFIGIVTEYYTSHSYKPVREVAEASNTGAATNIIYGLSLGYHSSVIPVILLVITIVTANLLAGMYGIAIAALGM 433          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_LEPIC (Pyrophosphate-energized proton pump OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=hppA PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.659e-60
Identity = 119/235 (50.64%), Postives = 168/235 (71.49%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE+ IPEDDPRNPA IADNVGDNVGD+AGMG+DLFGS AE++CAALV+ + +S  ++    ++LYPLLIS+ GI   ++T+  A     VK    +E +LK QL +ST+L+   +  V+   +  SF I    A K +  W +++ + VGL++G+ IG VTEYYTS++Y PV++VA++  TGAATN+I+GL+LGY S +IP+  + ++I  +   A MYGIA+AALGM
Sbjct:  208 GADLVGKVEKGIPEDDPRNPATIADNVGDNVGDVAGMGADLFGSCAEATCAALVIGATAS-ALSGSVDALLYPLLISAFGIPASILTSFLA----RVKEDGNVESALKVQLWVSTLLVAGIMYFVTKTFMVDSFEI----AGKTITKWDVYISMVVGLFSGMFIGIVTEYYTSHSYKPVREVAEASNTGAATNIIYGLSLGYHSSVIPVILLVITIVTANLLAGMYGIAIAALGM 433          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_CLOTE (Pyrophosphate-energized proton pump OS=Clostridium tetani GN=hppA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.924e-43
Identity = 103/243 (42.39%), Postives = 144/243 (59.26%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSF--------SFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPAVIADNVGDNVGD+AGMG+DLF SY  S  +AL + ++    +      +++PL++SSIGI+  +I  LF+         K+ + +L     I  +++ V  AI+S                 +  N + F  VA GL  G+IIG +TE YTS+AYS VQ +A+   TG AT +I GLA+G  S + PI  I++ + VSF        +   +YGI++AA+GM
Sbjct:  182 GADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVGSIISALTLGTV----VYANKEGVMFPLILSSIGIVASIIGILFS----RKSKAKDPQKALNTGTYIGGIIVIVSAAILS---------------NTIFGNLKAFFAVASGLVVGMIIGKITEMYTSDAYSSVQKIANQSETGPATTIISGLAVGMYSTLWPIVLISIGVLVSFFVMGGGSNAMVGLYGISLAAVGM 401          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA1_METAC (Pyrophosphate-energized proton pump 1 OS=Methanosarcina acetivorans GN=hppA1 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.508e-43
Identity = 103/239 (43.10%), Postives = 146/239 (61.09%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVA---SISSFGINHEFTSMLYPLLISSIGILVCLITTLFA-TDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPAVIADNVGDNVGDIAGMG+DL+ SY  S  A +++A   + ++F        +L PL+IS+IGIL  ++ T F  T+  E  A   I  +    LI + +L  +    V      +S  +  +G         +F     GL AG +IG +TE+YTS    P   VA+SC+TG+ATN+I G A G +S + P+  I+++I+++F  + +YGIA+AA+GM
Sbjct:  193 GADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLYESYVGSILATMLLAASTAATTFPNIPVENVILVPLIISAIGILASIVGTFFVRTNKTESSA---IHMAFNMGLIAAIILTVIASYFV------TSMLLGEYGL-------NVFFATVAGLVAGFLIGQITEHYTSYDRKPTLRVANSCQTGSATNIITGFAKGMESTLWPVVIISIAIYIAFQLSGLYGIAIAAVGM 415          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_BACTN (Pyrophosphate-energized proton pump OS=Bacteroides thetaiotaomicron GN=hppA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.895e-42
Identity = 106/249 (42.57%), Postives = 147/249 (59.04%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAES--SCAAL-VVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLC-VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAA----------MYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPA IADNVGDNVGD+AGMG+DL+ SY  S  + AAL   A I S     +F +++ P+LI+++GIL+ +I  +F+    E   VK++  SL     +S+VL+     ++ W+                + NW    C V VGL  G++IG  TEYYTS +Y P Q +++S +TG AT +I G+ LG  S  IP+ A+ V I  SF  A+          +YGI +AA+GM
Sbjct:  204 GADLVGKVEAGIPEDDPRNPATIADNVGDNVGDVAGMGADLYESYCGSILATAALGAAAFIHSADTVMQFKAVIAPMLIAAVGILLSII-GIFSVRTKENATVKDLLGSLAFGTNLSSVLIVAATFLILWL--------------LQLDNWIWISCAVVVGLLVGIVIGRSTEYYTSQSYRPTQKLSESGKTGPATVIISGIGLGMLSTAIPVIAVVVGIIASFLLASGFDFSNVGMGLYGIGIAAVGM 437          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA1_METMA (Pyrophosphate-energized proton pump 1 OS=Methanosarcina mazei GN=hppA1 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 103/239 (43.10%), Postives = 144/239 (60.25%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVA---SISSFGINHEFTSMLYPLLISSIGILVCLITTLFA-TDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            GADLVG+VE  IPEDDPRNPAVIADNVGDNVGDIAGMG+DL+ SY  S  A +++A   + ++F        ++ PL+I+++GIL  +I T F  T+  E  A   I  +    LI + VL  +   +V      +   +  +G         +F     GL AG +IG +TE+YTS    P   VA SC+TG+ATNVI G A G +S + P   I+++I+++F  A +YGIA+AA+GM
Sbjct:  193 GADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLYESYVGSIIATMLLAASTAAATFPGIPVMNVVMVPLVIAAVGILASVIGTFFVRTNKTESSA---IHMAFNMGLIAAIVLTVIASYVV------TGHLLGGYGL-------NVFFSTVAGLVAGFLIGQITEHYTSYDKKPTLTVAHSCQTGSATNVITGFAKGMESTLWPAVIISIAIYIAFQLAGLYGIAIAAVGM 415          
BLAST of FC920342 vs. ExPASy Swiss-Prot
Match: HPPA_RHIME (Pyrophosphate-energized proton pump OS=Rhizobium meliloti GN=hppA PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 100/237 (42.19%), Postives = 133/237 (56.12%), Query Frame = 3
Query:    3 GADLVGQVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVS--WIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGM 707
            G DLVG+VE  IPEDDPRNPA IADNVGDNVGD AGM +DLF +YA S  A +V+ASI   G     T M YPL I +     C+IT++  T   ++ A   I  +L + LI++  L  +G+   +   IG  S  T+    A   +  W LFLC  +GL    +I  +TEYYT     PV  +A +  TG  TNVI GLA+  +S  +P   I   I  ++ FA ++G A+A   M
Sbjct:  191 GGDLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVSVVATMVLASIFFAGAPVLATVMTYPLAICA----ACIITSIIGTFFVKLGANASIMGALYRGLIVTGALSILGLGAATSLTIGWGSIGTV----AGMDITGWNLFLCGIIGLIVTALIVVITEYYTGTNKRPVNSIAQASVTGHGTNVIQGLAVSLESTALPAIVIVGGIIATYQFAGLFGTAIAVTAM 419          
The following BLAST results are available for this feature:
BLAST of FC920342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
AVP1_ARATH1.568e-12191.49Pyrophosphate-energized vacuolar membrane proton p... [more]
AVP_PHAAU1.467e-11989.36Pyrophosphate-energized vacuolar membrane proton p... [more]
AVP_HORVU3.996e-11787.66Pyrophosphate-energized vacuolar membrane proton p... [more]
HPPA_LEPIN7.659e-6050.64Pyrophosphate-energized proton pump OS=Leptospira ... [more]
HPPA_LEPIC7.659e-6050.64Pyrophosphate-energized proton pump OS=Leptospira ... [more]
HPPA_CLOTE2.924e-4342.39Pyrophosphate-energized proton pump OS=Clostridium... [more]
HPPA1_METAC8.508e-4343.10Pyrophosphate-energized proton pump 1 OS=Methanosa... [more]
HPPA_BACTN1.895e-4242.57Pyrophosphate-energized proton pump OS=Bacteroides... [more]
HPPA1_METMA7.202e-4243.10Pyrophosphate-energized proton pump 1 OS=Methanosa... [more]
HPPA_RHIME7.963e-4142.19Pyrophosphate-energized proton pump OS=Rhizobium m... [more]

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Properties
Property NameValue
Genbank descriptionC32007A12EF RVDevelop1 Citrus clementina cDNA clone C32007A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920342 ID=FC920342; Name=FC920342; organism=Citrus clementina; type=EST; length=709bp
TTGGTGCTGATCTTGTCGGACAGGTTGAGAGAAACATTCCAGAAGATGAC
CCAAGAAACCCAGCTGTCATTGCTGACAATGTTGGTGATAATGTTGGAGA
CATAGCTGGCATGGGTTCTGATCTTTTTGGCTCCTATGCTGAATCATCCT
GTGCTGCTCTTGTCGTTGCATCCATCTCATCTTTTGGAATCAACCACGAG
TTCACTAGCATGCTGTATCCTCTGCTCATCAGTTCTATAGGCATCCTTGT
TTGTCTGATCACAACGCTCTTTGCTACAGATATCTTTGAAGTCAAGGCTG
TTAAGGAAATTGAACCATCATTGAAGAAACAGCTTATCATCTCTACTGTT
CTTATGACTGTTGGAATTGCAATTGTTAGCTGGATAGGCTTGCCATCTTC
CTTCACAATTTACAATTTTGGAGCTCAGAAGGTTGTGAAGAACTGGCAAC
TATTTTTATGTGTGGCTGTTGGTCTTTGGGCTGGACTTATCATTGGGTTT
GTGACTGAGTATTACACTAGCAATGCATACAGCCCTGTGCAAGATGTTGC
CGATTCCTGCAGAACAGGAGCTGCCACCAATGTTATCTTTGGCCTTGCCT
TGGGATACAAATCTGTCATCATACCAATTTTTGCCATTGCAGTCAGCATT
TTTGTTAGTTTTAGTTTTGCTGCTATGTATGGTATTGCTGTGGCTGCCCT
TGGAATGCT
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