FC920346

Overview
NameFC920346
Unique NameFC920346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920346 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.301e-12
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 3
Query:  279 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALENFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLD 491
            NF ++AI+ V+QA ++DNA NYA+A  LY+ +LE F T LKYEK+ + K  I  K  EYL+RAE+++  LD
Sbjct:    5 NFLQKAIQIVQQATEQDNAKNYAEAHRLYIQSLEWFTTALKYEKSERSKATIKAKTLEYLQRAEQLKEYLD 75          
BLAST of FC920346 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11
Identity = 42/121 (34.71%), Postives = 60/121 (49.59%), Query Frame = 3
Query:  279 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALENFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXXXPEQAKLRAGLNSAII 641
            +F  + IE V++A+  D A  Y +A+  Y N L+     LKYEKNPK K+ I  KFTEYL RAE+++  L+      A    +A  +      K             +  KLR  L+SAI+
Sbjct:    5 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEANAAKKSPSA-GSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAIL 124          
The following BLAST results are available for this feature:
BLAST of FC920346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VPS4_DICDI1.301e-1250.70Vacuolar protein sorting-associated protein 4 OS=D... [more]
VPS4_YEAST3.204e-1134.71Vacuolar protein sorting-associated protein 4 OS=S... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32007B05EF RVDevelop1 Citrus clementina cDNA clone C32007B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920346 ID=FC920346; Name=FC920346; organism=Citrus clementina; type=EST; length=643bp
GTCATGCAAATTGCGAAGGGGTGCAATTGGTTTGCTTTCCTTTCGGAGAA
ACAACCTTTTTTTTTTTTTTTCCCCAAAACAAAACCAAATAACCAATCCA
AAGAGGAATCCGTGGACACGGCTGCTTCACTTTGACATTTAATCAAACAC
AAAACAAACAGGAAACTCAAATTCGAAATCGAAATCTTTCAATTCACCCA
AAAATCAAAATTAGTAATTTCACATGCGATCCGATCATAAACCCTAACCA
ATAAATTTATAATTTGAAGATGTACAGCAACTTCAAGGAACAGGCAATCG
AGTACGTGAAACAAGCCGTGCAAGAAGACAATGCTGGAAATTACGCAAAA
GCCTTCCCTCTTTACATGAACGCCTTGGAGAATTTCAAAACCCACTTGAA
GTACGAGAAGAATCCCAAGATTAAGGAGGCGATCACTCAGAAATTCACCG
AGTATTTGCGCCGGGCCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGG
CCCGGCCCCGCTCACAACGGGGACGCTGCGGTGGCGACCCGGCCTAAGAC
GAAGCCGAAGGATGGTGGTGATGGTGGCAGCCGTGATGGGGAGGATCCGG
AGCAGGCGAAGCTGAGGGCTGGATTGAATTCGGCGATTATTAG
back to top