FC920349

Overview
NameFC920349
Unique NameFC920349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length436
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14125 contig Ccv1_Contig14125:1..436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920349 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.823e-26
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 2 
Query:  107 MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 436
            + ++I N   +   K PP        KF   +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP
Sbjct:   63 LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 166
[Close]
BLAST of FC920349 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.927e-26
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  206 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 436
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 165
[Close]
BLAST of FC920349 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.927e-26
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  206 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 436
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 165
[Close]
BLAST of FC920349 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.927e-26
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  206 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 436
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 165
[Close]
BLAST of FC920349 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.927e-26
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  206 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 436
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 165
[Close]
BLAST of FC920349 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.927e-26
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  206 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP 436
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP
Sbjct:   88 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 163
The following BLAST results are available for this feature:
BLAST of FC920349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UXS1_XENTR1.823e-2656.25UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_RAT6.927e-2672.73UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB6.927e-2672.73UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE6.927e-2672.73UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN6.927e-2672.73UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE6.927e-2672.73UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
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Properties
Property NameValue
Genbank descriptionC32007B08EF RVDevelop1 Citrus clementina cDNA clone C32007B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920349 ID=FC920349; Name=FC920349; organism=Citrus clementina; type=EST; length=436bp
GATGTGTGGGTCTCTGTCTTCCTACTGCTATCCAATATTACAACCTTAAA
ATCGCCACTTTCAATTATTTTATCAGTTTCCCGGAGTGATTTAAGAAGTT
TGAGGAATGGCTCAGGAAATTTCAAATGGAAATCACAACTCTGCTTCTAA
ACCACCTCCAACTCCGTCCCCTTTGAGATTCTCCAAATTTTTTCAGTCCA
ACATGAGGATTCTGGTTACTGGAGGAGCTGGATTTATCGGCTCTCACCTT
GTGGACAAGTTGATGGAAAATGAAAAGAACGAGGTGATTGTAGTTGATAA
CTACTTCACTGGCTCAAAGGATAACCTAAGGAAATGGATTGGTCACCCAA
GATTTGAGCTTATTCGTCATGATGTGACTGAGCCATTGTTGATCGAGGTT
GATCAAATTTATCACCTTGCTTGTCCTGCCTCCCCA
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