FC920352

Overview
NameFC920352
Unique NameFC920352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5984 contig Ccv1_Contig5984:81..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C60_ORYSJ (Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 71/93 (76.34%), Postives = 81/93 (87.10%), Query Frame = 3
Query:  411 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPET 689
            M+  LMN LRACWRPSS+++    +D AGRQ+GLLWYKD GQH+NGEFSMAVVQANNLLEDQ QIESGPLS L+SGPYGTF+G+YD HGGPET
Sbjct:    1 MIVTLMNLLRACWRPSSNQHARAGSDVAGRQDGLLWYKDTGQHVNGEFSMAVVQANNLLEDQCQIESGPLSFLDSGPYGTFVGVYDGHGGPET 93          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C46_ARATH (Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.656e-33
Identity = 70/93 (75.27%), Postives = 77/93 (82.80%), Query Frame = 3
Query:  411 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPET 689
            MLS LM  L AC  PSS      S+D+ G+Q+GLLWYKD GQH+ GEFSMAVVQANNLLEDQSQ+ESGPLSTL+SGPYGTFIGIYD HGGPET
Sbjct:    1 MLSTLMKLLSACLWPSSSS--GKSSDSTGKQDGLLWYKDFGQHLVGEFSMAVVQANNLLEDQSQVESGPLSTLDSGPYGTFIGIYDGHGGPET 91          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C64_ARATH (Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 63/93 (67.74%), Postives = 80/93 (86.02%), Query Frame = 3
Query:  411 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPET 689
            MLS LMNFL AC  P SD+   +++D+ GRQEGLLW++D+GQH+ G+FSMAVVQAN+LLEDQSQ+ESG LS+ +SGP+GTF+G+YD HGGPET
Sbjct:    1 MLSGLMNFLNACLWPRSDQQARSASDSGGRQEGLLWFRDSGQHVFGDFSMAVVQANSLLEDQSQLESGSLSSHDSGPFGTFVGVYDGHGGPET 93          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C79_ARATH (Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.004e-32
Identity = 64/94 (68.09%), Postives = 76/94 (80.85%), Query Frame = 3
Query:  411 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTL-ESGPYGTFIGIYDSHGGPET 689
            MLS   NFL +C  PSS    HT +D+ G+Q+GLLWYKD+  H+ G+FSMAVVQANNLLEDQSQ+ESGPL+TL  SGPYGTF+G+YD HGGPET
Sbjct:    1 MLSLFFNFLTSCLWPSSSTTSHTYSDSKGKQDGLLWYKDSAHHLFGDFSMAVVQANNLLEDQSQVESGPLTTLSSSGPYGTFVGVYDGHGGPET 94          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C28_ORYSJ (Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.101e-29
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 3
Query:  411 MLSRLMNFLRACWRPSSDR-YVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPET 689
            ML+ +M++ R+CW P S   +    +D AGRQ+GLLWYKD GQ + GEFSMAVVQANNLLEDQSQ+ESG LS  E GP GTFIG+YD HGGPET
Sbjct:    1 MLAAVMDYFRSCWGPRSPAGHRVRGSDVAGRQDGLLWYKDAGQLVTGEFSMAVVQANNLLEDQSQVESGALSMAEPGPQGTFIGVYDGHGGPET 94          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C72_ORYSJ (Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  411 MLSRLMNFLRACWRPSSDRY--VHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPET 689
            MLS  M +LR+CW P+S         +D AGRQ+GLLWYKD GQ + GEFSMAVVQANNLLED SQ+ESGPLST +    GT +G+YD HGGPET
Sbjct:    1 MLSAAMEYLRSCWGPASSPAGRPRKGSDAAGRQDGLLWYKDAGQLVAGEFSMAVVQANNLLEDHSQVESGPLSTTDPNLQGTLVGVYDGHGGPET 95          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C38_ARATH (Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.537e-26
Identity = 50/88 (56.82%), Postives = 67/88 (76.14%), Query Frame = 3
Query:  423 LMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPE 686
            ++  +  CWR  S +  H++ D  GR +GLLWYKD+G H+ GEFSM+V+QANNLLED S++ESGP+S  +SGP  TF+G+YD HGGPE
Sbjct:    7 ILRMVAPCWRRPSVKGDHSTRDANGRCDGLLWYKDSGNHVAGEFSMSVIQANNLLEDHSKLESGPVSMFDSGPQATFVGVYDGHGGPE 94          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C48_ARATH (Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.653e-26
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  444 CWRPSS--DRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPE 686
            CWRP    +     S DT GR +GLLWYKD+G HI GEFSMAVVQANNLLED SQ+ESGP+S  ESGP  TF+G+YD HGGPE
Sbjct:   13 CWRPFGIGEDSSPGSDDTNGRLDGLLWYKDSGNHITGEFSMAVVQANNLLEDHSQLESGPISLHESGPEATFVGVYDGHGGPE 95          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C67_ARATH (Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  435 LRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPE 686
            ++ CWR  +   +  S     + +GL WYKD G H  GEFSMA++QAN+++EDQ QIESGPL+       GTF+G+YD HGGPE
Sbjct:    2 VKPCWRIGAG--MERSKINPTKVDGLTWYKDLGLHTFGEFSMAMIQANSVMEDQCQIESGPLTFNNPTVQGTFVGVYDGHGGPE 83          
BLAST of FC920352 vs. ExPASy Swiss-Prot
Match: P2C42_ARATH (Probable protein phosphatase 2C 42 OS=Arabidopsis thaliana GN=At3g17090 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  411 MLSRLMNFLRACWRPSSDRYVHTSADTAGR-----------QEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDSHGGPE 686
            M   LMN    C++P      ++ A + G            ++GLLW++D G++  G+FSMAV+QAN +LEDQSQ+        ESG +GTF+G+YD HGGPE
Sbjct:    1 MSGSLMNLFSLCFKPFGHVCDNSEAGSGGGGGVSGGTGGEGKDGLLWFRDLGKYCGGDFSMAVIQANQVLEDQSQV--------ESGNFGTFVGVYDGHGGPE 95          
The following BLAST results are available for this feature:
BLAST of FC920352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
P2C60_ORYSJ9.932e-3976.34Probable protein phosphatase 2C 60 OS=Oryza sativa... [more]
P2C46_ARATH3.656e-3375.27Probable protein phosphatase 2C 46 OS=Arabidopsis ... [more]
P2C64_ARATH6.235e-3367.74Probable protein phosphatase 2C 64 OS=Arabidopsis ... [more]
P2C79_ARATH9.004e-3268.09Probable protein phosphatase 2C 79 OS=Arabidopsis ... [more]
P2C28_ORYSJ1.101e-2965.96Probable protein phosphatase 2C 28 OS=Oryza sativa... [more]
P2C72_ORYSJ4.624e-2863.16Probable protein phosphatase 2C 72 OS=Oryza sativa... [more]
P2C38_ARATH2.537e-2656.82Probable protein phosphatase 2C 38 OS=Arabidopsis ... [more]
P2C48_ARATH5.653e-2667.47Probable protein phosphatase 2C 48 OS=Arabidopsis ... [more]
P2C67_ARATH2.153e-1750.00Probable protein phosphatase 2C 67 OS=Arabidopsis ... [more]
P2C42_ARATH5.303e-1641.75Probable protein phosphatase 2C 42 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32007C01EF RVDevelop1 Citrus clementina cDNA clone C32007C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920352 ID=FC920352; Name=FC920352; organism=Citrus clementina; type=EST; length=721bp
CCCAGGGACAATTGACACTCTCATTCACAGCTCTTTTATTTCTTTATAAT
CATTTCATTTTTATCTCTCTATCTTCCTCTGTGTCATCTCTTTTGTTTTT
TTTTTCATTCAAATTAAAAATTCAGTTTTTATAGAAAAGATAGAAAAAAA
ATCACGAAGCTTTGAAGTAAACAGAAGCTACCGTGTGATTTGGTGGATCT
ATAGATCAAACGGTGTTAAACCCTTGCATGTATTGCTCTGTTTCATTTAG
ATCTCCATCGTTTTCATCACTTTAGCTGACGGGAAACTCTGCAACCAGCT
TTATTTTTTGTCGTGAAAGAATTCTGGGTGGGATTTTTATTAGGAATTGT
ATTTGCATCCAATTCTGGATGTGGAAGAATAGGAGGCTGTTGGCTGAGGT
GAGATGAGGGATGTTATCAAGGTTGATGAACTTTCTGAGGGCCTGCTGGC
GGCCGTCCTCGGACCGATATGTCCATACGAGTGCGGATACAGCAGGCCGG
CAAGAGGGGCTACTTTGGTACAAAGACAATGGGCAACACATAAATGGTGA
ATTCTCTATGGCCGTTGTTCAGGCTAACAATTTGCTTGAGGACCAGAGCC
AGATTGAGTCTGGCCCCTTGAGCACTCTTGAGTCTGGTCCTTATGGCACT
TTTATTGGTATCTATGATAGCCATGGCGGGCCTGAGACTCACGATACATC
ATGATCACTGGTTCAGCATCT
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