FC920355

Overview
NameFC920355
Unique NameFC920355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12761 contig Ccv1_Contig12761:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920355 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  502 KGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 687
            KGN V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDW 67          
BLAST of FC920355 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.538e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  502 KGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 687
            KGN V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDW 67          
BLAST of FC920355 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.315e-12
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  508 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNW 687
            N V V+VM+PLD +T+ NT  ++    A L+ L  AG +GVM+DVWWGLVE  +PG Y+W
Sbjct:    8 NYVQVYVMLPLDVITVDNTFEKEDETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDW 67          
The following BLAST results are available for this feature:
BLAST of FC920355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AMYB_HORVU2.538e-1253.23Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP2.538e-1253.23Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_MAIZE3.315e-1251.67Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC32007C04EF RVDevelop1 Citrus clementina cDNA clone C32007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920355 ID=FC920355; Name=FC920355; organism=Citrus clementina; type=EST; length=687bp
GGAGCCCCACTACACAAGCACACGATATCAGACTTTCCATTCAAAAAAAC
TAAAGAACGTTGAGCCAAAAAAAAAAAAAAAAAACTAAAGAACGAAAAAG
ATAAAAAACAAAAAAAAAAATTTCTCTGTTATTTTCTCGGGAAAATCAAA
TCTTCGCGCAAAATGGCTTTGAATCTAACACACCAGATCGGTACACTAGC
TGGAACACCAATTCAGATGGACACAGGCGTCGTGTCCGGCGATTCAACGG
GGACGGTGAACGCATCGGCGGTGTGGAAACCGGTGTCAACAGATTTGCGC
TGTGCGATCCAAAAACCTGATCTGAAGGACACAATGTCGCCACCAGTGAG
CCCCTGCCGGTCGCCGGTACTGTCGAGCATGCGAGCAGATCTGTCAGTGG
CATGCCGCGCATTCGCGACAGAGTCTCCGACGGCGGCAGCGGTGACGGAG
TTCTCCGAGGAGGTTGGCGGCGAGATGTACAAGCAGGGCGGCTTGCAAGA
AAAGGGGAACGGAGTGCCGGTGTTCGTGATGATGCCGCTGGACAGCGTGA
CGATGTCGAATACTGTGAATAGAAAGAAGGCGATGGACGCGAGTCTCAGG
GCGTTGAAGAGCGCGGGAGTGGAAGGAGTTATGATGGACGTGTGGTGGGG
CCTGGTCGAGAGGGACCAGCCCGGCCATTACAATTGG
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