FC920360

Overview
NameFC920360
Unique NameFC920360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10332 contig Ccv1_Contig10332:2..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.456e-102
Identity = 169/186 (90.86%), Postives = 178/186 (95.70%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            VFFEERF++GWE+RWV SDWKKDENTAGEWNYT+GKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS   DQKKFGGDTPYSIMFGPDICGYSTKKVHAIL YN TN LIKKEVPCETDQLTHVYT ++RPDATYSILIDNVEKQ+GSLY+DWDLLPP+
Sbjct:   22 VFFEERFEDGWENRWVKSDWKKDENTAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSSSTDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNDTNHLIKKEVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDWDLLPPK 207          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 371.318 bits (952), Expect = 2.484e-102
Identity = 168/186 (90.32%), Postives = 180/186 (96.77%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            VFFEERF++GW+ RWVTS+WKKDEN AGEWNYT+GKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGY+KLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAIL YN TN LIKK+VPCETDQLTHVYTFI+RPDATYSILIDN+EKQ+GSLYSDWDLLP +
Sbjct:   26 VFFEERFEDGWDKRWVTSEWKKDENLAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYIKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNNTNNLIKKDVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLPAK 211          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 9.439e-102
Identity = 171/186 (91.94%), Postives = 178/186 (95.70%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            VFFEE F++GWESRWV S+WKKDEN AGEWN+T+GKWNGD NDKGIQTSEDYRFYAISAEFPEFSNK K LVFQFSVKHEQKLDCGGGYMKLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYN TN LIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPP+
Sbjct:   29 VFFEESFNDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKGKNLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNDTNHLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPK 214          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 366.311 bits (939), Expect = 7.991e-101
Identity = 168/186 (90.32%), Postives = 178/186 (95.70%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            V FEERFD+GWE+RWV S+WKKD+NTAGEW +TAG W+GD NDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYN  N LIKK+VPCETDQLTHVYTFILRPDATYSILIDNVEKQ+GSLYSDWDLLPP+
Sbjct:   24 VIFEERFDDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNEANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPK 209          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 5.179e-100
Identity = 172/210 (81.90%), Postives = 182/210 (86.67%), Query Frame = 3
Query:   30 MAKLNPXXXXXXXXXXXXXXXXXHVFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            MAKLNP                  V FEE+F++GWE RWV SDWKKD+NTAGEW +TAG W+GD NDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLS +VDQ KFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTN LIKKEVPCETDQLTHVYTF+LRPDATYSILIDNVEKQ+GSLYSDWDLLP +
Sbjct:    1 MAKLNPKFISLILFALVVIVSA-EVIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAK 209          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.507e-99
Identity = 166/186 (89.25%), Postives = 175/186 (94.09%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            VFFEERF++GWE RWV S+WKKDE+ AGEWNYT+GKWNGD NDKGIQTSEDYRFYAISAEFPEFSNKD TLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAI  YN TN LIKK+VPCETDQLTHVYTFILRPDATYSILIDN EKQ+GSLY+DWDLLP +
Sbjct:   27 VFFEERFEDGWEKRWVKSEWKKDESMAGEWNYTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAIFNYNDTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWDLLPAK 212          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 9.768e-99
Identity = 164/186 (88.17%), Postives = 177/186 (95.16%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            VFFEERF++GWES+WV SDWK+DEN AGEWN+T+GKWNGD NDKGIQTSEDYRFYAISA FPEFSNK KTLVFQFSVKHEQKLDCGGGYMKLLSG+VDQKKFGGDTPYSIMFGPDICGYSTKKVHAILT   TN LIKK+VPCETDQLTHVYTFILRPDA+YSILIDNVEKQSGS+Y+DWD+LPP+
Sbjct:   24 VFFEERFEDGWESKWVKSDWKRDENMAGEWNFTSGKWNGDANDKGIQTSEDYRFYAISAAFPEFSNKGKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTKGETNHLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPPK 209          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 345.125 bits (884), Expect = 1.906e-94
Identity = 154/186 (82.80%), Postives = 171/186 (91.94%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            VFF+E+F++GWESRWV S+WKKDEN AGEWN+T+GKWNGDP DKGIQTSEDYRFYAISAE+PEFSNKDKTLV QFSVKHEQKLDCGGGY+KLL G+VDQKKFGGDTPYSIMFGPDICGYSTKKVH I T N  N LIKK+VPCETDQL+HVYT I+ PDATY+ILIDNVEKQSGS+Y  WD+LPP+
Sbjct:   31 VFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPK 216          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.323e-87
Identity = 146/186 (78.49%), Postives = 165/186 (88.71%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            VFF+E+F++GWESRWV S+WKKDEN AGEWN+T+GKWNGD  DKGIQTSEDYRFYAISAE+PEFSNKDKTLV QFSVKHEQKLDCGGGY+KLL G+VDQK  GGDT YSI+  PDI  YSTKKVH ILT +G N LIKK+VPC+TDQLTHVYTFI+RPDATYSILIDN EK +GS+Y  WD+LPP+
Sbjct:   27 VFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDAEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKTLGGDTSYSIISRPDISRYSTKKVHTILTKDGKNHLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPPK 212          
BLAST of FC920360 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.087e-73
Identity = 121/186 (65.05%), Postives = 155/186 (83.33%), Query Frame = 3
Query:  102 VFFEERFDEGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPR 659
            +F EE F+ GW+SRWV SDWK++E  AG + +TAGKW GDP++KGIQT  D + YAISA+ PEFSNK++TLV Q+SVK EQ ++CGG Y+KLLSG V+QK+FGGDTPYS+MFGPDICG  TKK+H I++Y G N  IKK++ CETD+L H YTFILRPDA+YS+L+DN E++ GS+Y+DWD+LPPR
Sbjct:   30 IFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPPR 215          
The following BLAST results are available for this feature:
BLAST of FC920360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CALR_RICCO1.456e-10290.86Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_PRUAR2.484e-10290.32Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_NICPL9.439e-10291.94Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR2_ARATH7.991e-10190.32Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR1_ARATH5.179e-10081.90Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_BETVU1.507e-9989.25Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR_BERST9.768e-9988.17Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_ORYSJ1.906e-9482.80Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE1.323e-8778.49Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR3_ARATH1.087e-7365.05Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32007C09EF RVDevelop1 Citrus clementina cDNA clone C32007C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920360 ID=FC920360; Name=FC920360; organism=Citrus clementina; type=EST; length=669bp
GAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAGC
TTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTCA
CGTCTTCTTCGAAGAACGCTTTGACGAGGGATGGGAAAGCCGGTGGGTTA
CATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACACT
GCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTGA
AGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAACA
AGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCTT
GACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGAA
GAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATCT
GTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAACA
AACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTCA
TGTTTATACTTTCATCCTCCGTCCAGATGCTACTTACAGCATCCTCATTG
ACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCTC
CCTCCAAGACCATNCAGGA
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