FC920374

Overview
NameFC920374
Unique NameFC920374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:681..1024. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.798e-57
Identity = 109/112 (97.32%), Postives = 112/112 (100.00%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL++GIDFY+PI
Sbjct:  192 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFDGIDFYAPI 303          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.349e-57
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDI+GNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYS I
Sbjct:  192 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTI 303          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 8.925e-57
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KA+S GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYS I
Sbjct:  192 KASSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTI 303          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 1.988e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK+KKDI+GNPRALRRLRT+CERAKRTLSSTAQTTIEIDSLYEGIDFYS I
Sbjct:  192 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKSKKDITGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGIDFYSTI 303          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 9.868e-56
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNK+DI+G PRALRRLRTACERAKRTLSSTAQTTIEIDSLY G DFYSPI
Sbjct:  192 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKQDITGQPRALRRLRTACERAKRTLSSTAQTTIEIDSLYGGADFYSPI 303          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.289e-55
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KATS GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV EFKRK+KKDI+GNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG+DFYS I
Sbjct:  192 KATSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVHEFKRKHKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSTI 303          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 6.396e-55
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDF 325
            KATS GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL+EGIDF
Sbjct:  190 KATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDF 297          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.058e-53
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KA+  GE+NVLIFDLGGGTFDVS+LTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV EFKRKNKKDISGN RALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY+ I
Sbjct:  191 KASRKGEQNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVSEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATI 302          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 2.687e-53
Identity = 103/112 (91.96%), Postives = 106/112 (94.64%), Query Frame = 2
Query:    2 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH +QEFKRKNKKDI   P  +RRLRTACERAKRTLSSTAQTTIEIDSLYEG+DFYSPI
Sbjct:  192 KATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHSLQEFKRKNKKDIMETPGHIRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYSPI 303          
BLAST of FC920374 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.645e-52
Identity = 97/109 (88.99%), Postives = 106/109 (97.25%), Query Frame = 2
Query:   11 SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSPI 337
            +VGE+NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR+VNHFVQEFKRK+KKD+S NPRALRRLRTACERAKRTLSS AQTTIEIDSL+EG+DFY+ +
Sbjct:  187 TVGERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDLSSNPRALRRLRTACERAKRTLSSAAQTTIEIDSLFEGVDFYTSL 295          
The following BLAST results are available for this feature:
BLAST of FC920374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP73_ARATH1.798e-5797.32Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP72_SOLLC2.349e-5798.21Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP7C_PETHY8.925e-5797.32Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP71_ARATH1.988e-5696.43Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP72_ARATH9.868e-5695.54Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP71_SOLLC1.289e-5594.64Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP70_MAIZE6.396e-5598.15Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
HSP70_SOYBN2.058e-5391.96Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP7E_SPIOL2.687e-5391.96Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP71_PUCGR8.645e-5288.99Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionC32007E06EF RVDevelop1 Citrus clementina cDNA clone C32007E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920374 ID=FC920374; Name=FC920374; organism=Citrus clementina; type=EST; length=344bp
GAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGATCTGGGTG
GCGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAATCTTTGAA
GTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGATTTTGATAA
CAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAACAAGAAGG
ATATTAGCGGTAACCCTAGAGCTCTTAGGAGATTGAGGACTGCTTGTGAG
AGAGCGAAGAGGACTCTCTCCTCTACTGCCCAGACTACAATTGAGATTGA
TTCTTTGTATGAGGGTATTGACTTCTACTCACCCATACTCGTGC
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