FC920401

Overview
NameFC920401
Unique NameFC920401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920401 vs. ExPASy Swiss-Prot
Match: Y1666_ARATH (Uncharacterized protein At1g76660 OS=Arabidopsis thaliana GN=At1g76660 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 83/171 (48.54%), Postives = 101/171 (59.06%), Query Frame = 1
Query:  190 QKRRWGGCWNISWCFGFQKHRKRIGHAVLVPEP---TASRSNASE---AVNSTQATAIXXXXXXXXXXXXXXXQSEPPSATQSPAGLVSLNSISGNMYSPGGPSS-IFAIGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPESVHLTTPSSPEVPFAQLLDPSLRFGEQGQ 681
            Q++RWGGC  +  CF  QK  KRI  A  +PE    +AS+ N +     +N+  A  I                S  PS TQSP   +SL +      SPGGPSS ++A GPYAHETQLVSPPVFSTFTTEPSTAPFTPPPE   LT PSSP+VP+A+ L  S+     G+
Sbjct:    7 QRKRWGGCLGVFSCFKSQKGGKRIVPASRIPEGGNVSASQPNGAHQAGVLNNQAAGGINLSLLAPPSSPASFTNSALPSTTQSPNCYLSLAA-----NSPGGPSSSMYATGPYAHETQLVSPPVFSTFTTEPSTAPFTPPPELARLTAPSSPDVPYARFLTSSMDLKNSGK 172          
The following BLAST results are available for this feature:
BLAST of FC920401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1666_ARATH7.982e-3348.54Uncharacterized protein At1g76660 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC32007G12EF RVDevelop1 Citrus clementina cDNA clone C32007G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920401 ID=FC920401; Name=FC920401; organism=Citrus clementina; type=EST; length=707bp
GATAGCTTCCTCTGTGAGTCTGAGTTCCTCACTTTCTCGAGAAAAATTTG
TTATTATTTTCCGAGAAAATTAGAGATGAGAGGCGTGAATGGAGGAGATT
CGAGAGCTTTGAACAACAGTTTGGAGACTATAAGCGCAGCTGCTACTGCG
ATCGCGTCAGCTGAGAATCGCGTTCATCGAGCTACGTCTCAGAAGAGAAG
ATGGGGGGGTTGCTGGAACATATCCTGGTGTTTTGGATTTCAAAAACACA
GAAAGCGAATAGGGCATGCTGTCCTTGTTCCTGAACCAACAGCCTCCCGA
AGTAATGCTTCTGAAGCTGTAAATTCTACCCAAGCAACTGCTATTTCTCT
TCCCTTTGTTGCACCTCCATCCTCTCCTGCATCTTTCCTTCAATCAGAAC
CTCCTTCTGCAACACAATCACCTGCAGGTTTAGTTTCTCTCAACTCTATT
TCTGGCAACATGTACTCTCCTGGCGGGCCTTCCTCAATTTTTGCTATTGG
CCCTTATGCCCACGAAACTCAGTTAGTTTCGCCACCTGTCTTCTCAACCT
TCACCACAGAACCATCAACTGCGCCTTTCACTCCTCCTCCCGAGTCTGTC
CATTTGACTACACCTTCCTCTCCCGAGGTGCCATTTGCTCAGCTTCTTGA
CCCCAGTCTCCGATTTGGGGAGCAAGGTCAGAAATCCCGTTTTCCTATAT
GAATTTC
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