FC920404

Overview
NameFC920404
Unique NameFC920404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig398 contig Ccv1_Contig398:366..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.162e-60
Identity = 122/246 (49.59%), Postives = 156/246 (63.41%), Query Frame = 1
Query:    1 VTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRS--TAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVA------------EERPVPSFFLCPILQEIM 696
            +TL+GACPE WSLVYEYLP GSL+DRL  K N  PL W++R RIA EI + L FLHS+K   +VHGDLKP NILLDS L SK+ DFG C L+       P+  +S  T   G+  Y DPE   +G LTPKSD YSFG+I+L+LLTGR  + ++ EV+ A+  G L+ +LDPLAGDWP   A +L  L L+CCE     RPD+   + + LE +  +            E R  P +F+CPI QE+M
Sbjct:  537 ITLIGACPEGWSLVYEYLPGGSLEDRLTCKDNSPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDSNLVSKLSDFGTCSLLH------PNGSKSVRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPIFQEVM 776          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.508e-55
Identity = 115/241 (47.72%), Postives = 146/241 (60.58%), Query Frame = 1
Query:    1 VTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPV---------PSFFLCPILQEIM 696
            V LLGACPE   LVYEYL NGSL++ +F + N  PL W  R R+  E+A GL FLHSSKPE IVH DLKP NILL+    SKI D G+ +LVT+      + +R++   G+  Y DPEYHRTG + PKSD Y+FG+IILQLLT R P G+   V  AV  G L+ +LD    DWP      L  +GL+C E   R+RPD+   ++  L++L       V         PS + CPIL+EIM
Sbjct:  498 VLLLGACPENGCLVYEYLENGSLEEYIFHRKNKPPLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGIVPAVENAVKKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKSEVIPVLKRLVETANSKVKKEGSNLRAPSHYFCPILREIM 738          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.773e-54
Identity = 116/252 (46.03%), Postives = 156/252 (61.90%), Query Frame = 1
Query:    7 LLGACPEAWSLVYEYLPNGSLQDRLF-RKSNVS-----PLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV--SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH--------------VAEERPVPSFFLCPILQEIM 696
            LLGACPE  SLVYEY+ NGSL++RL  R+ NV      PL W +R RIA EIAS L FLH+++P  IVH DLKP NILLD    SKI D G+ ++V  D  +  +    T P G+F Y DPEY RTGV+TP+SD Y+FG+I+LQL+T R  +GLA  + +A+    GK + ILD  AGDWP   A+ +V +GL+C E+  R+RPD+   ++  LE+L               +      P+ F CPI +++M
Sbjct:  487 LLGACPERGSLVYEYMHNGSLEERLMKRRPNVDTPQPPPLRWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMVNLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGLAHSIEKALRDQTGKFTEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASIARNMFADNLIDHHHNAPTHFYCPITKDVM 738          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.165e-52
Identity = 112/245 (45.71%), Postives = 152/245 (62.04%), Query Frame = 1
Query:    1 VTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLP-SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER----------PVPSFFLCPILQEIMH 699
            V LLGACPE  +LVYEY+ NGSL+DRLF+ +N  PL W +R RIA E+A+ L FLH SKP+ I+H DLKP NILLD    SK+ D G+  +V  D L    + ++ T+P G+  Y DPEY RTG ++ KSD YSFG+I+LQLLT +  + L   V  A+ S  +   ILD  AG+WP    R L  L L C EL G++RPD+   ++  LE L    E+            P+ F+CP+L+++M+
Sbjct:  536 VLLLGACPEQGALVYEYMENGSLEDRLFQVNNSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLCYIDPEYQRTGRISSKSDIYSFGMILLQLLTAKPAIALTHFVESAMDSNDEFLKILDQKAGNWPIEETRELAALALCCTELRGKDRPDLKDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPLLKDVMN 780          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.987e-52
Identity = 106/244 (43.44%), Postives = 147/244 (60.25%), Query Frame = 1
Query:    1 VTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP----------VPSFFLCPILQEIMH 699
            V LLGACPE   LVYEY+ NGSL DRL   ++  P+ W +R RIA E+AS L FLH SKP  I+H DLKP NILLD    SK+ D G+  +V +D +   +  + T+P G+  Y DPEY RTG+++PKSD YS G++ILQL+T +  + +   V  A+    +  +ILD  AG WP    R L  LGL C E+  R+RPD+   ++  LE+L    ++            PS F+CP+L+ +M+
Sbjct:  546 VLLLGACPERGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDVSSRTIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEEAIGDDAEFMAILDKKAGSWPISDTRELAALGLCCTEMRRRDRPDLKDQIIPALERLRKVADKAQNLLSRTPSGPPSHFICPLLKGVMN 789          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.860e-50
Identity = 110/247 (44.53%), Postives = 152/247 (61.54%), Query Frame = 1
Query:    1 VTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLV-TEDTLYLP-SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV---SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER----------PVPSFFLCPILQEIM 696
            V LLGACP+  +LVYEY+ NGSL+DRLF+ ++  P+ W  R RIA E+AS L FLH SKP  I+H DLKP NILL+    SK+ D G+  ++   D L    + ++ T+P G+  Y DPEY RTG ++PKSD Y+FG+IILQLLTG+  + L   V  A+   +  +L  ILD  AG+WP    R+L  L LQC EL  ++RPD+   ++  LE L    ++            PS F CP+L+++M
Sbjct:  516 VLLLGACPDHGALVYEYMENGSLEDRLFQVNDSQPIPWFVRLRIAWEVASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTVETAMENNNDDELIQILDEKAGNWPIEETRQLAALALQCTELRSKDRPDLEDQILPVLESLKKVADKARNSLSAAPSQPPSHFFCPLLKDVM 762          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.846e-45
Identity = 104/245 (42.45%), Postives = 146/245 (59.59%), Query Frame = 1
Query:    1 VTLLGACPEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSL----------VKELEQLHVAEE---RPVPSFFLCPILQEIM 696
            VTL+GACPE+ SL+Y+Y+PNGSL+D    ++NV  L W+ R RIA+EI S L FLHS+ P  I+HG+LKP  ILLDS L +KI D+GI +L+  D L             S P+ DP Y  +  +T +SD Y+FG+I+LQLLT R   G+  +V+ A+    +S++LD  AGDWP    ++L ++ ++CC+     RPD+   L          V   E    A +   R  PS +LCPI QE+M
Sbjct:  516 VTLMGACPESRSLIYQYIPNGSLEDCFSSENNVPALSWESRIRIASEICSALLFLHSNIP-CIIHGNLKPSKILLDSNLVTKINDYGISQLIPIDGL-----------DKSDPHVDPHYFVSREMTLESDIYAFGIILLQLLTRRPVSGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNRPDLAVVLRFIDRMKAPEVPSSETSSYANQNVPRRPPSHYLCPIFQEVM 748          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.908e-36
Identity = 89/230 (38.70%), Postives = 131/230 (56.96%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV----GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH---VAEERPVPS 663
            V+LLG C +     LVYEY+PNGSLQD L  +    PL    R RIA   A G+ +LH+     I+H D+KP NILLDS+++ K+ DFGI +L+  D   +   H +T  KG+  Y DPEY+ +  LT KSD YS G++ L++LTG  P+     +  EV  A   G + S++D   G +     +R ++L ++CC+     RP +   +V+ELE ++     EE+P  S
Sbjct:  688 VSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFR-QPLSLALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILLDSKMNPKVADFGISKLIALDGGGVQRDHVTTIVKGTPGYVDPEYYLSHRLTEKSDVYSLGIVFLEILTGMRPISHGRNIVREVNEACDAGMMMSVIDRSMGQYSEECVKRFMELAIRCCQDNPEARPWML-EIVRELENIYGLIPKEEKPYSS 915          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.626e-31
Identity = 88/225 (39.11%), Postives = 126/225 (56.00%), Query Frame = 1
Query:    1 VTLLGAC--PEAWSLVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVG----LAGEVRRAVSCGK----LSSILDPL----AGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQL 633
            V LLG C   +   LVYEY+PNGSL+D L  K+ V  L W  R +IA     GL +LH      I+H D+K  NILLD  L++K+ DFG+ +LV +        H +T  KG+  Y DPEY+ T  LT KSD Y FG+++L+LLTG+ P+     +  EV++ +   +    L  +LD      +G+   F   + VD+ LQC E  G  RP ++  +V+ELE +
Sbjct:  691 VKLLGFCFDQKEQMLVYEYIPNGSLRDGLSGKNGVK-LDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPE----KAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSPIDRGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQNSGNLKGF--EKYVDVALQCVEPEGVNRPTMS-EVVQELESI 907          
BLAST of FC920404 vs. ExPASy Swiss-Prot
Match: Y1677_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.253e-30
Identity = 82/217 (37.79%), Postives = 116/217 (53.46%), Query Frame = 1
Query:    1 VTLLGACPEAWS--LVYEYLPNGSLQDRLFRKSNVSPLLWKDRARIAAEIASGLCFLHSSKPEKIVHGDLKPQNILLDSELSSKICDFGICRLVTEDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV---------GLAGEVRRAVSCGKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLV 615
            V L+G C EA    LVYEY+ NGSL D L   S+  PL W  R +IA + A GL +LH+     I+H D+K  NILLD  + +K+ DFG+ R   ED       H S+  KG+  Y DPEY+ +  LT KSD YSFG+++ +LL+G+ PV          +    R  +  G +  I+DP +A +       R+ ++  QC E  G  RP +   +V
Sbjct:  663 VPLIGYCEEADRRILVYEYMHNGSLGDHLHGSSDYKPLDWLTRLQIAQDAAKGLEYLHTGCNPSIIHRDVKSSNILLDINMRAKVSDFGLSRQTEEDLT-----HVSSVAKGTVGYLDPEYYASQQLTEKSDVYSFGVVLFELLSGKKPVSAEDFGPELNIVHWARSLIRKGDVCGIIDPCIASNVKIESVWRVAEVANQCVEQRGHNRPRMQEVIV 874          
The following BLAST results are available for this feature:
BLAST of FC920404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 345
Match NameE-valueIdentityDescription
PUB33_ARATH1.162e-6049.59U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB34_ARATH2.508e-5547.72U-box domain-containing protein 34 OS=Arabidopsis ... [more]
PUB51_ARATH2.773e-5446.03U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB35_ARATH1.165e-5245.71U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB52_ARATH1.987e-5243.44U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB53_ARATH1.860e-5044.53Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB32_ARATH6.846e-4542.45U-box domain-containing protein 32 OS=Arabidopsis ... [more]
Y5374_ARATH9.908e-3638.70Probable LRR receptor-like serine/threonine-protei... [more]
Y5977_ARATH5.626e-3139.11Probable leucine-rich repeat receptor-like protein... [more]
Y1677_ARATH1.253e-3037.79Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC32007H03EF RVDevelop1 Citrus clementina cDNA clone C32007H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920404 ID=FC920404; Name=FC920404; organism=Citrus clementina; type=EST; length=700bp
GTGACTCTGCTTGGCGCATGCCCAGAAGCCTGGTCCCTTGTATATGAGTA
TTTGCCCAATGGTAGTCTCCAAGACCGTCTTTTCCGTAAAAGCAACGTTT
CTCCCTTGTTATGGAAGGATCGAGCTCGGATTGCAGCTGAAATAGCTAGC
GGCCTTTGCTTTTTGCACTCATCCAAACCTGAAAAGATTGTCCATGGTGA
TTTGAAACCACAAAACATTCTTCTAGACTCTGAACTCAGCAGCAAGATAT
GCGATTTTGGCATCTGCCGGCTGGTAACCGAGGACACCCTTTATTTGCCC
AGTTTTCATCGGAGCACTGCGCCAAAGGGTTCTTTTCCATATGCAGATCC
AGAGTACCACAGGACTGGAGTCCTAACTCCCAAGTCCGACAGTTACTCCT
TTGGGTTGATAATCCTACAGCTACTTACTGGAAGGCTGCCAGTTGGGTTA
GCAGGTGAAGTGCGAAGAGCTGTGTCATGCGGGAAGTTATCATCCATCTT
GGATCCATTAGCTGGAGATTGGCCTACGTTTGTTGCAAGGCGTTTAGTGG
ACCTGGGATTGCAATGCTGTGAATTGTACGGTAGGGAGCGACCCGATATC
ACACCATCTCTGGTAAAGGAATTGGAACAGCTGCATGTTGCAGAGGAACG
ACCAGTTCCATCATTCTTTTTGTGCCCCATTCTTCAGGAAATAATGCATG
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