FC920419
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920419 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 7.769e-33 Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1 Query: 286 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSL 477 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSL Sbjct: 80 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSL 143 HSP 2 Score: 93.5893 bits (231), Expect = 4.795e-19 Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 3 Query: 57 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYRIRPTWAWKGPS 320 M ++ AVLNGL SSF+ GGKK+QALL T RVT + PKKSWIPAVK GGNL++PEWLDGSLPGD+ P K P+ Sbjct: 1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPA 91
BLAST of FC920419 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.731e-32 Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1 Query: 286 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSL 477 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+L Sbjct: 80 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTL 143 HSP 2 Score: 93.2041 bits (230), Expect = 6.262e-19 Identity = 52/90 (57.78%), Postives = 57/90 (63.33%), Query Frame = 3 Query: 63 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYRIRPTWAWKGPS 320 A TS AVLNGL SSF+ GG KSQALLA RV L KKSWIPAV+GGGNL++PEWLDGSLPGDY P K P+ Sbjct: 2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPA 91
BLAST of FC920419 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.914e-31 Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1 Query: 286 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSL 477 GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+L Sbjct: 85 GFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTL 148 HSP 2 Score: 85.8853 bits (211), Expect = 9.998e-17 Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 3 Query: 57 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYRIRPTWAWKGPS 320 MAAATS A++NG S F++GGKKS Q+LL ++V T PKKSWIPAVKGGGN ++PEWLDGSLPGD+ P K P+ Sbjct: 1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPA 96
BLAST of FC920419 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.676e-12 Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 286 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG 435 GFDPLGLG DP LKW +AEL+H RWAM GIF+ + + I W+ AG Sbjct: 87 GFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAG 142 HSP 2 Score: 32.7278 bits (73), Expect = 1.676e-12 Identity = 15/34 (44.12%), Postives = 17/34 (50.00%), Query Frame = 3 Query: 195 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYRIRP 296 P + W P PEWLDGSLPGD+ P Sbjct: 63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDP 90
BLAST of FC920419 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 8.036e-12 Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1 Query: 286 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG 435 GFDPLGL DP L+W ++AEL+H RWAM GIF+ + + I W+ AG Sbjct: 87 GFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAG 142 HSP 2 Score: 33.8834 bits (76), Expect = 8.036e-12 Identity = 22/85 (25.88%), Postives = 35/85 (41.18%), Query Frame = 3 Query: 42 VEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYRIRP 296 V S ++ +G+++ +SF+ GG++ + T P + W P P WLDGSLPGD+ P Sbjct: 13 VAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDP 90 The following BLAST results are available for this feature:
BLAST of FC920419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920419 ID=FC920419; Name=FC920419; organism=Citrus clementina; type=EST; length=477bpback to top |