FC920438

Overview
NameFC920438
Unique NameFC920438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15521 contig Ccv1_Contig15521:3..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920438 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.865e-52
Identity = 110/186 (59.14%), Postives = 130/186 (69.89%), Query Frame = 3
Query:  114 KVKITSKTHVKPSK-VIGRRECQLVTFDLPYLFFYYNQKLLLYRNG---DREF----HDAVEKLKDGLKHVLEEFSQLAGKLGKDEEGVFRVEYXXXXXXXXXXXXXXXXXXXXX---LTAEEGTKSFKELIPYYGVLNLEGTHRPLLALQLTKLKDGMVIGCAFNHAILDGTSTWHFMSSWAQAC 638
            K+KI SKTHVKP+K V+G+++  L TFDLPYL FYYNQK LLY+     D E     ++ VE LKDGL  VLE+F QLAGKL KD+EGVFRVEY                        LTAE+GT  FKEL+PY G+LNLEG  RPLLA+Q+TKLKDG+ +G AFNHA+LDGTSTWHFMSSWA+ C
Sbjct:    2 KIKIMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQNEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAEDGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEIC 187          
BLAST of FC920438 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.626e-16
Identity = 55/188 (29.26%), Postives = 88/188 (46.81%), Query Frame = 3
Query:   99 MAEITKVKITSKTHVKPSKVI--GRRECQLVTFDLPYLFFYYNQKLLLYRNGDREFHDAVEKLKDGLKHVLEEFSQLAGKLGK-----DEEGVFRVEYXXXXXXXXXXXXXXXXXXXXXLTAEEGTKSFKELIPYYGVLNLEGTHRPLLALQLTKLKDGMVIGCAFNHAILDGTSTWHFMSSWAQACN 641
            MA++T +   S + V+P  +   GR +  L  FDL  L+  Y Q+ LL+   D E H  + +L+  L   L+ +   AG+L K     DE   F +                                F+   P  GV +++G   PLLALQ+T+++DG+ IG  +NH + DG S W+F  +W++ C+
Sbjct:    1 MADVTFI---SSSIVRPQIINQEGREKIHLTPFDLNLLYVDYTQRGLLFPKPDPETH-FISRLRTSLSSALDIYFPFAGRLNKVENHEDETVSFYINCDGSGAKFIHAVSDSVSVSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLALQVTEMRDGVFIGFGYNHMVADGASIWNFFRTWSKICS 184          
The following BLAST results are available for this feature:
BLAST of FC920438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DCR_ARATH2.865e-5259.14BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
Y3028_ARATH9.626e-1629.26Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC32008D10EF RVDevelop1 Citrus clementina cDNA clone C32008D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920438 ID=FC920438; Name=FC920438; organism=Citrus clementina; type=EST; length=642bp
GAAGCAGAAGTGCTCCTGAACATCTCATCTCTTCTATTAGTTCATCCAAC
AAAAACAAATCAAAAGTGCTTTTGACAATCAGAACCCTAATATTAGAAAT
GGCAGAGATAACAAAGGTGAAGATTACAAGCAAAACCCATGTGAAGCCGA
GCAAAGTGATAGGAAGAAGAGAGTGTCAGCTGGTGACTTTTGATCTGCCG
TATCTGTTTTTTTATTACAACCAGAAGCTGTTGTTGTATAGAAACGGGGA
CCGTGAGTTTCACGACGCTGTCGAGAAACTCAAAGATGGGCTTAAGCATG
TGTTGGAGGAGTTTTCTCAGCTGGCTGGGAAGCTGGGGAAAGATGAAGAA
GGTGTCTTTAGGGTTGAGTATGATGATGACATGGACGGCGTCGAGGTGGC
CGAGGCCGTCGCTGATGAGATCGCCGTCGATGATCTGACGGCTGAGGAAG
GCACCAAGAGTTTCAAGGAGTTGATTCCCTATTATGGAGTCCTGAATTTG
GAGGGGACTCATCGGCCTTTGTTGGCTCTTCAGTTGACCAAGCTGAAAGA
CGGAATGGTAATTGGATGCGCGTTCAATCACGCGATCCTAGACGGCACCT
CCACGTGGCACTTCATGAGCTCATGGGCCCAGGCGTGCAACG
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