FC920441

Overview
NameFC920441
Unique NameFC920441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14143 contig Ccv1_Contig14143:1..650. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
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BLAST of FC920441 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.391e-15
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:  298 LGTMMATALAQNGAKVIIASRKEKALKEVADELNGHSQGSCEYIVADLGTKAGCDFLASEVKKRTDKVHILINNSGVTWGAQFDKVPEKEGWDRVFALNVKSIFYLTSALTPLL 639
            +G M+A  L + GA+V I +R  +A  + A  L+ +  G C+ I ADL ++AG   LA  + + + ++ IL+NN+G +WGA  +  P   GW++V  LNV S+F     L PLL
Sbjct:   21 IGQMIAQGLLEAGARVFICARDAEACADTATRLSAY--GDCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYP-VSGWEKVMQLNVTSVFSCIQQLLPLL 131
The following BLAST results are available for this feature:
BLAST of FC920441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHLG_PSEAE8.391e-1537.72Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
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Properties
Property NameValue
Genbank descriptionC32008E02EF RVDevelop1 Citrus clementina cDNA clone C32008E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920441 ID=FC920441; Name=FC920441; organism=Citrus clementina; type=EST; length=650bp
GACTGCTGCTGGTTTGGCTTTTATCGAGATTCTGGCTGATTGAAGCGTCG
TCGCATCTTCCTGATCACTGCTGTTGGCATCTCGCGAACCTGCTGCGCCC
ATTCCTGTCCTCTGGCATCTGCAACTCCTCCAACTTTTGGTCGATATTTC
GACTACATAGTATCAAGAGCCCGGACCTTCACGGCATAATACTTGGAGCA
AGCATTCAAGAGAGCTCCCTACAACATGAGCCTTGCGGTACCTCGACTAT
TCGATGTCAAAGGAAAGGTCGCAGTCGTTACAGGAGGAGGCAGCGGCCTC
GGAACGATGATGGCGACTGCCCTTGCGCAAAACGGCGCGAAAGTCATCAT
CGCCTCAAGAAAAGAGAAAGCCCTGAAAGAGGTTGCCGACGAATTGAACG
GTCACTCGCAGGGTAGTTGCGAATACATTGTAGCAGACCTGGGCACGAAA
GCTGGGTGCGACTTCCTCGCTAGCGAAGTGAAGAAGCGCACAGACAAAGT
CCACATCCTCATCAACAATTCAGGAGTAACCTGGGGCGCTCAGTTCGATA
AGGTTCCAGAGAAAGAAGGCTGGGATCGCGTTTTTGCGCTAAACGTCAAG
AGCATCTTCTACCTTACTTCCGCACTAACGCCTTTGCTTGCGGAGGGATC
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