FC920449

Overview
NameFC920449
Unique NameFC920449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9467 contig Ccv1_Contig9467:10..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.236e-89
Identity = 158/208 (75.96%), Postives = 177/208 (85.10%), Query Frame = 3
Query:  108 MVKMSLIFSLFVGLLMV----GLVSSAKFDDLYQTSWAFNHVQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            MV M L   + + +++V      VS AKFD+LY++SWA +H   +G+  KL LDNYSGAGF S+SKYLFGKVSIQIKLV GDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPY+VQTN+YVNGVGNREQRL+LWFDPT EFHTYS+LW++R VVF+VDETPIRV  NLE KGIPF KDQAMGVYSSIWNADDWATQG  VKTDWSH
Sbjct:    1 MVGMDLFKCVMMIMVLVVSCGEAVSGAKFDELYRSSWAMDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSH 208          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 4.427e-63
Identity = 109/205 (53.17%), Postives = 149/205 (72.68%), Query Frame = 3
Query:  108 MVKMSLIFSLFVGLLMVGLVSSAKFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            ++  +++ +L V + M G   S  F++ +  +W  +   +   G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS+GP H+E DFEFLGN TG+PY++ TNV+  G GNREQ+  LWFDPTK FHTYSL+W  + ++F+VD  PIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+G  VKTDWS
Sbjct:    4 ILNRTVLMTLLV-VTMAGTAFSGSFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWS 207          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.393e-62
Identity = 108/182 (59.34%), Postives = 136/182 (74.73%), Query Frame = 3
Query:  177 KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            +F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTKE+H YS+LWN  Q+VF VDE PIRV  N +  G+ FP DQ M +Y+S+WNADDWAT+G   KTDWS
Sbjct:   32 QFGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWS 213          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.424e-61
Identity = 108/202 (53.47%), Postives = 144/202 (71.29%), Query Frame = 3
Query:  138 FVGLLMVGLVSSA-------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            F  L++VG+V S         F   +  +W  +  +    G  L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS GP H+E DFEFLGN +G+PY++ TN++  G GNREQ+  LWFDPT+ FHTYS++W  + ++FLVD TPIRV  N E  G+PFPK+Q M +YSS+WNADDWAT+G  VKTDWS
Sbjct:   11 FYVLMLVGIVVSTMVATCAGSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWS 212          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.206e-60
Identity = 113/207 (54.59%), Postives = 144/207 (69.57%), Query Frame = 3
Query:  135 LFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            L + L++V L SSA            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF +K  YLFG  S+ IK+V GDSAGTVTAF +SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H YS+LWN  Q+VFLVD  PIRV  NL+  G+ FP +Q M VY+S+WNADDWAT+G   KTDWS
Sbjct:    6 LILCLVLVSLASSALCAAPRRPVDVPFGRNYIPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWS 212          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60
Identity = 109/204 (53.43%), Postives = 145/204 (71.08%), Query Frame = 3
Query:  120 SLIFSLFVGLLMVGLVSSA---KFDDLYQTSWAFNH--VQYDGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            S + ++   +L+V L  SA    F D +  +W  +   +   G+ L L+LD  SG+GF SK +YLFG++ +Q+KLV G+SAGTVTA+Y+SS G  H+E DFEFLGN TG+PY++ TNV+  G G+REQ+  LWFDPTK FHTYS++W  + ++FLVD  PIRV  N E  G+PFPK Q M +YSS+WNADDWAT+G  VKTDWS
Sbjct:    5 SSLTTIVATVLLVTLFGSAYASNFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGATHDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWS 208          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.057e-60
Identity = 103/176 (58.52%), Postives = 133/176 (75.57%), Query Frame = 3
Query:  192 YQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDW 713
            Y  +WAF+H++Y   G  + L LD Y+G GF SK  YLFG  S+ IK+V GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G GNREQR++LWFDP+K++H+YS+LWN  Q+VF VD+ PIRV  N +  G+ FP +Q M +YSS+WNADDWAT+G   KT+W
Sbjct:   36 YFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNW 211          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.984e-60
Identity = 105/181 (58.01%), Postives = 135/181 (74.59%), Query Frame = 3
Query:  180 FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            FD  Y  +WA +H+ Y   G  ++L+LD  +G GF ++  YLFG  S+ IKLVGGDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK++H+YS+LWN   + F VD+TPIRV  N +  G+ +P DQ M +YSS+WNADDWAT+G R KTDWS
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWS 212          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.815e-60
Identity = 110/208 (52.88%), Postives = 144/208 (69.23%), Query Frame = 3
Query:  132 SLFVGLLMVGLVSSA-----------KFDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWS 716
            SL+  L+++ L S++            F   Y  +WAF+H++Y   G  ++L+LD Y+G GF SK  YLFG  S+ IKLV GDSAGTVTAFY+SS    H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPT ++H YS+LWN  Q+VF VD+ PIRV  N    G+ FP +Q M +Y+S+WNADDWAT+G   KTDWS
Sbjct:    4 SLWTCLILLSLASASFAANPRTPIDVPFGRNYVPTWAFDHIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSSTNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWS 211          
BLAST of FC920449 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.741e-59
Identity = 111/208 (53.37%), Postives = 147/208 (70.67%), Query Frame = 3
Query:  123 LIFSL-FVGLLMVGLVSSAK------FDDLYQTSWAFNHVQY--DGDTLKLNLDNYSGAGFASKSKYLFGKVSIQIKLVGGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYLVQTNVYVNGVGNREQRLDLWFDPTKEFHTYSLLWNQRQVVFLVDETPIRVHTNLEHKGIPFPKDQAMGVYSSIWNADDWATQGERVKTDWSH 719
            L+FS+  + L ++GL    +      F   Y+ SWA +H++Y   G T+ L LD  SGAGF SK  YLFG  S+++KLVGGDSAG VTAFY+SS+   H+E DFEFLGN TG+PY++QTNV+  G G+REQR+ LWFDPTK +H+YS+LWN  Q+V  VD+ PIR   N +  G+ FP +Q M +YSS+W+ADDWAT+G   KTDWS+
Sbjct:    6 LLFSIVLINLSLLGLCGYPRKPVDVPFWKNYEPSWASHHIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSN 213          
The following BLAST results are available for this feature:
BLAST of FC920449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH9_ARATH1.236e-8975.96Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH16_ARATH4.427e-6353.17Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN6.393e-6259.34Probable xyloglucan endotransglucosylase/hydrolase... [more]
BRU1_SOYBN1.424e-6153.47Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTHB_PHAAN1.206e-6054.59Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH1.575e-6053.43Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH2.057e-6058.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT5.984e-6058.01Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN7.815e-6052.88Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH_TOBAC1.741e-5953.37Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionC32008E10EF RVDevelop1 Citrus clementina cDNA clone C32008E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920449 ID=FC920449; Name=FC920449; organism=Citrus clementina; type=EST; length=719bp
GACAGATCAGCATTTCAAAGTATAAGCTTCAACTTCCCTCCACTTCACTG
GGCCTGCTCTGCTCATTCGCTTACTTCCTCTCCCCGTTCTTCTGTCTTCA
TTCTTCAATGGTTAAAATGTCTTTGATTTTCAGTCTGTTTGTGGGTCTTT
TAATGGTAGGTTTGGTCAGCTCAGCTAAGTTTGATGACCTTTATCAAACA
AGCTGGGCATTTAATCATGTTCAGTATGATGGGGACACTCTCAAGCTTAA
CCTCGATAATTATTCCGGAGCTGGGTTTGCGTCAAAGAGCAAGTATTTGT
TTGGGAAAGTCTCCATCCAAATTAAACTTGTAGGGGGTGACTCTGCTGGA
ACTGTCACTGCCTTCTATATGTCATCAGACGGTCCAAATCACAACGAGTT
CGATTTTGAGTTCCTGGGGAACACTACAGGAGAGCCATACTTAGTCCAAA
CCAATGTTTATGTGAATGGTGTGGGCAACAGAGAGCAGAGACTTGACCTC
TGGTTCGACCCAACAAAGGAATTTCATACCTATTCCCTCCTTTGGAACCA
GCGCCAAGTTGTATTTTTGGTGGATGAGACCCCAATTAGAGTGCACACTA
ACTTGGAGCACAAAGGAATTCCCTTCCCCAAGGACCAAGCCATGGGTGTG
TACAGTTCAATATGGAATGCTGATGACTGGGCCACACAGGGGGAAAGGGT
CAAGACGGACTGGAGCCAT
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